| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_0210 |
|---|
| Symbol | |
|---|
| ID | 8566840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | + |
|---|
| Start bp | 222592 |
|---|
| End bp | 224331 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | succinate dehydrogenase or fumarate reductase, flavoprotein subunit |
|---|
| Protein accession | YP_003289504 |
|---|
| Protein GI | 268315785 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTCT CACACGACGT CGTCATCGTA GGAGCCGGTG GTTCGGGCCT GATGGCGGCG
CTTTACGCCA AGGAGGGCGG TGCGGACGTT GCGGTGATCT CGAAATTGCA CCCGCTGCGC
TCGCATACCG GTGCCGCACA GGGCGGGATC GGCGCGGCGC TGGGCAACGA AGAGGAAGAC
CACTGGCTCT GGCACGCCTT CGACACGGTC AAGGGGAGTG ACTACCTGGG CGACCAGGAT
GCCATCGAGA TCATGTGCCA GGACGCCCCC CGGACCATCA TCGAGCTGGA GCACTACGGC
GTGCCCTTCA GCCGCAACAA GGAGGGGAAG ATCGCGCAGC GGCGCTTCGG CGGCCATACG
CGCAACTTCG GCGAGGCGCC GGTGCGGCGT ACCTGCCACG CCGCCGACCG GACCGGTCAC
GCCATCCTGC ATACGCTCTA CGACCAGTGC GTCAAAAACC AGGTCCGCTT CTACGACGAG
TTTCAGGCGC TGGACCTGAT CATGACGCCC GACGGGGTCT GCTGCGGGGT GGTGGCCTAC
GAGCTGCTCA CCGGCGAGAT TCACATCTTC CATGCGAAGA TGGTCTGCCT GGCTACGGGC
GGCTACGGGC GCGTCTACAA GACAACCTCG AACGCCCACG CCAGCACGGG CGACGGCATG
GCCATCGTGC TCCGCAGCGG CCTGCCGCTC GAAGACATGG AGTTCGTGCA GTTCCATCCC
ACGGGCCTGT ACCGGCTGGG CATTCTGGTG ACCGAAGGGG CTCGCGGCGA AGGCGGCATT
CTGCTCAACG ATAAGGGCGA GCGCTTTATG GAGCGCTACG CGCCCACCGT GAAGGATCTG
GCCCCGCGTG ACCTGGTTTC GCGGGCCATC TACCGGGAGA TCCGCGAGGG CCGTGGCATC
AACGGCAAGG ACTACGTCTA TCTGGATCTG CGGCACGTCG GGCGCGAAGT GATCGAGACG
AAGCTCCCCG AGATCGCCAC GTTCAGCCGC ACCTATCTGG GGATCGATCC GGTGAAAGAG
CCGATCCCGG TGGCGCCCAC CTGCCACTAT GCAATGGGCG GCATCCCCAC TAGCTACGAC
GGGCAGGTGG AGCGGGCCGG TCGTGGTAGC ATCGTGCCCG GCCTTTACGC CGTGGGCGAA
TGCGCCTGCG TGTCGGTGCA CGGGGCCAAC CGCCTGGGCT CCAACTCGCT CGTCGATCTG
GTCGTCTTCG GACGCCGGGC CGGCATCCAC ATGGCCGAGA CGCTGCGCAA GGAAGGGCGC
AAAAAAGAAC CGCTGCCGGA AAATCCGGAC CGACGCGTCC GCGAAATGCT GGAAGACATT
CTGAGCCGGA CGCAGGGCGA GCCGGTGGCG GTCGTGCGCG CGGACCTGCA GCAGACCATG
ATGGACAACG TCTCCGTTTT CCGCACCGAG GAGACGCTGA ACACGGCGCT GGAGGATCTC
AAACAGATCC GGGAGCGGGC CCAGCGCGTG GTGATCCGGG ACAAGAGCAA GCGCTTCAAC
ACGGAGCTGA TGGACGCCGT CGAGCTGGGC TTTCTGGTCG ATCTGGCCGA AGTGATCACG
CGCTCGGCCC TGAACCGAAC CGAAAGCCGC GGCGCCCACT CGCGTGAGGA CTACCCGAAG
CGCGACGACG AGAACTGGCT CAAGCACACG CTCATTTACC GCGAAGGAGA AGGTGAGTAC
CGGTTCGATT ACAAACCGGT GACGATCACC CGATTCCAGC CGCAGGAACG AAAGTACTGA
|
|---|
| Protein sequence | MIFSHDVVIV GAGGSGLMAA LYAKEGGADV AVISKLHPLR SHTGAAQGGI GAALGNEEED
HWLWHAFDTV KGSDYLGDQD AIEIMCQDAP RTIIELEHYG VPFSRNKEGK IAQRRFGGHT
RNFGEAPVRR TCHAADRTGH AILHTLYDQC VKNQVRFYDE FQALDLIMTP DGVCCGVVAY
ELLTGEIHIF HAKMVCLATG GYGRVYKTTS NAHASTGDGM AIVLRSGLPL EDMEFVQFHP
TGLYRLGILV TEGARGEGGI LLNDKGERFM ERYAPTVKDL APRDLVSRAI YREIREGRGI
NGKDYVYLDL RHVGREVIET KLPEIATFSR TYLGIDPVKE PIPVAPTCHY AMGGIPTSYD
GQVERAGRGS IVPGLYAVGE CACVSVHGAN RLGSNSLVDL VVFGRRAGIH MAETLRKEGR
KKEPLPENPD RRVREMLEDI LSRTQGEPVA VVRADLQQTM MDNVSVFRTE ETLNTALEDL
KQIRERAQRV VIRDKSKRFN TELMDAVELG FLVDLAEVIT RSALNRTESR GAHSREDYPK
RDDENWLKHT LIYREGEGEY RFDYKPVTIT RFQPQERKY
|
|---|
| |