| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001526 |
|---|
| Symbol | |
|---|
| ID | 8559839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | - |
|---|
| Start bp | 1724497 |
|---|
| End bp | 1725930 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 646409196 |
|---|
| Product | sensory box/GGDEF family protein |
|---|
| Protein accession | YP_003288674 |
|---|
| Protein GI | 262396821 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0501758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAC CTATCGCTTC CCTCTTGGAA ACCGGAGTTT CTCTCATTTT ATTCGGTGGC
AGCATTTTTG TGGTGCTGGT TATCAAATGG AGCAACGACT CCATACTAGA ACTTCATACC
GTTGCTGAAA AAGAGAAACG TAATGCCGTT CACGACGCAC TTACTGGACT CCCTAACCGT
AAATACTGCT TTGAGTTAAT CGAAGATAGA ATACAGTCTG GAGACCCTTT CTCAGTGATC
CTTTTCGATG TCGTTAACTT TAAACAAGTC AACGATGCTA TGGGACACTT TTGTGGAGAC
CAACTGCTGA TTCAAATTGG GCAACGTCTC CAAGAGAAAC TTAAAGGCAG TGACAAAATT
TTCCGCGTTG GTGGCGATGA ATTTGTCATC CTCACCTCGT CAGCATGCGA GGAAACAGGC
AAAAGTCTCA TCGAAGAGTT AGATTCGGCA CTGTCTAATC GCTTCCATTT AGATGAGTTT
CAAGTCTCTT CCCGCGTTGT TTTCGGTGTC AGTACCTACC CTTATGACGC TCTGTCCAAT
GATCTATTGA TAAAGCACGC GGACATTGCC ATGTATCACG CCAAACGAAA TGGCAATCTC
TTTGCATTTT ATAATGAGGA CATGAACGTC GGGGCCAAAT ACCAGCTCGA AATCTCTTCT
CGTATTCAAT GTGCGCTGGA AAAAGAGGAG TTCCAGCTAT ACTACCAACC GTTGATTGAC
GCACATACTA ACTTAGCTGT CGGCTTTGAA GCCGTGATCC GTTGGCATGA TGAAAATGGT
AAAACGATTT CGCCTAACGA CTTCATCCCC ATCGCGGAGC GAAGTAATCA AGTGCACAAC
ATCACCATGT GGGTCCTAAA CCAAGTTGAA AAAGATCTCC AGACCTTTAT AGAAAAAGAC
ATCAAGCTTC CTGTCCACGT TAACTTATCT GCAAAAGATC TCTCGTCTAA TTTATTGTTC
AACCGCTTGG AAACACTGCT CAAAGTAAAC CCTCAATTTG CTGACCTTAT AAGCTTAGAG
ATTACTGAAA CGATGGCGAT TGATAGAGTT GTTGAGCTCA ACCCCCTAAT TCACCAAATC
AAAGGCTTGG GTATTAAGAT CAGCTTGGAC GACTTTGGCA CCGGGTATTC ATCTCTGTCG
CTTTTGAGAG ATCTCCCAGT TGATCAAATT AAAATCGACC GATCATTTCT TTGTACCGCA
AGCCGGACAG AGGGCACCCG CTCTATCGTT GAGAACACAA TAGCGTTAGC GCATGGTCTA
GGGTATTCAG TCGTCGCAGA AGGCGTTCAA GACATGGATA CACTGCATTT TTTACGCAGT
CGTGGCTGCG ACATCATTCA GGGCTACTTG TTCTGCCCAG CCCTACCCTT AAACGAAGTA
ATAACCTGGG TAAATGAGCA CGATGAAAAA CAAAGCCGTA TTCGACGCGC ATAA
|
|---|
| Protein sequence | MQKPIASLLE TGVSLILFGG SIFVVLVIKW SNDSILELHT VAEKEKRNAV HDALTGLPNR
KYCFELIEDR IQSGDPFSVI LFDVVNFKQV NDAMGHFCGD QLLIQIGQRL QEKLKGSDKI
FRVGGDEFVI LTSSACEETG KSLIEELDSA LSNRFHLDEF QVSSRVVFGV STYPYDALSN
DLLIKHADIA MYHAKRNGNL FAFYNEDMNV GAKYQLEISS RIQCALEKEE FQLYYQPLID
AHTNLAVGFE AVIRWHDENG KTISPNDFIP IAERSNQVHN ITMWVLNQVE KDLQTFIEKD
IKLPVHVNLS AKDLSSNLLF NRLETLLKVN PQFADLISLE ITETMAIDRV VELNPLIHQI
KGLGIKISLD DFGTGYSSLS LLRDLPVDQI KIDRSFLCTA SRTEGTRSIV ENTIALAHGL
GYSVVAEGVQ DMDTLHFLRS RGCDIIQGYL FCPALPLNEV ITWVNEHDEK QSRIRRA
|
|---|
| |