Gene VEA_001524 details

Gene Information

• Locus tag: VEA_001524
• ID: 8559837
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013457
• Strand: -
• Start bp: 1720072
• End bp: 1722075
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 646409194
• Product: exoribonuclease II
• Protein accession: YP_003288672
• Protein GI: 262396819
• COG category: [K] Transcription
• COG ID: [COG4776] Exoribonuclease II
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02062] exoribonuclease II

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000001616
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCAAG ATAACCCACT ACTCGCTCAG CTTAAGCAGC AAATCCAAGA AAACCTGCCG 
AAAAAAGAAG GCTCAATAAA AGCCACAGAT AAAGGCTTTG GCTTTTTGGA AGTGGACAGC 
AAGACTAGCT TCTTCATCCC ACCTGCGTAC ATGAAAAAGT GCATGCACGG TGACAAAGTC 
GTCGCCATTA TCCGCACAGA AAATGAACGC GAAGTTGCAG AGCCACAAGA GCTGTTAGAA 
CAAGCCGTGA CTCGCTTTAT TGGTCGAGTC AAAATGTTCA AAGGCAAGCT AAACGTAGCA 
CCTGATCACC CACAGCTTAA AAAGCTTTCT CTTAAAGCGA AACTAAAGAA AGGTCTAAAA 
CCTGACGAGT TCGCTGAGGG AGATTGGGTT GTCGCACATC TTATTCGCCA CCCTCTAAAA 
GGCGATAACT CTTTCTTCGT GGAAATTTCT GAAAAAATCA CAGACGCGAA CGACAAAATT 
GCACCTTGGT GGGTAACGCT TGCTCAAAAC GATCTACCAA ACTCTGAGCC AGCAGGCATC 
GAGAACTGGG AACTAAAAGA CGACGCCGAT CTAGAACGCG TAGACATGAC ACACGTTCCT 
TTCGTGACTA TCGATGGTGA ATCAACCAAA GATATGGACG ATGCGCTGTA CGCGAAGAAA 
ACCGAATCTG GCGATTTCGA ACTGACTATC GCTATCGCAG ATCCAACCGC CTACATCACA 
CCAGAAGATG AAATGGATAA AGTAGCACGT GAGCGTGGCT ATACTATTTA TCTTCCGGGC 
CGCAATATTC CAATGCTGCC TCGCGATCTA GCAGACAACC TATGCTCTCT GATTGAAGGC 
GAAATCCGCC CTGCTATTTG CTGTACCGTA ACCGTAAATA AAGACGGCGT AATTGGCGAC 
GATATCAAGT TCTTTGCAGC AAACATCAAA TCACACGCAC GCCTAGCATA CGATCACGTG 
TCTGATTGGC TAGAAAACGG CAGCTCAGAA GCATGGCAAC CATCTGAAGA GATCGCGACG 
ATCGTTCGTG ACCTTTACGA CTTTTCCCTT GCTCGCGCAG AATGGCGTGA GAAAAACGCA 
GTGGTCTTCC CAGACCGCCC TGACTACCGT TTTGAGCTGA GTGAAGACAA CGATGTGGTT 
GCTATTCATG CAGATATGCG CCGCAGTGCA AATCGCTTGG TTGAAGAGTC AATGATTACC 
GCAAACATCT GTGCAGGTCG TACACTGCGC GATAAATTTG AAACAGGTGT TTTCAATACT 
CACGCTGGCA TTAAGACTGA GAAGATTGAA GAAGTGGTTC AACTTGTCAA TCCAGAAGGT 
GCACTGGAAT TCACAGCGGA GTCAATTACT ACTCTAGAAG GCTTTGCTGC ATTGCGTCGC 
TGGTTGGCTG CGCAAGAAAC CTCTTACCTA GATAATCGTA TTCGTAAGTT CCAAGCCTAC 
AGTGAGGTAG GTAATCAGCC TCTTCCTCAT TACGCTATGG GGCTGGATAT CTATGCGACT 
TGGACATCAC CAATTCGTAA GTACGGCGAT ATGATCAACC ATCGCATGTT GAAGGCCGTC 
ATCCTAGGCA AAGAGCCAGT GCAAAAACCT GATGATCAAG TCGGTGAAGA ACTAGCTCTG 
CACCGTAAAC ATCATAAAAT TGCTGAGCGA AATGTCTCAG ATTGGTTATA TGCACGTACG 
CTTGCTGATG AGCCGAACAA GAAAACTTGT TTCACAGGTG AGATTTTCGA TATTAATCGT 
GCTGGTGCAC GTGTCCGACT TCTCGAAAAT GGCGCAGCAG CCTTTATTCC TGGTGCACTA 
ATTCTTGATA ATAAAGAAAG AATTGAGTGC AATGGCGACA ACGGTACCAT CTCTATCGAT 
AAAGAGGTCG TATACAAACT TGGTGATACA TTGGAAATTG TCCTTGCGGA CGTAAACCAA 
GAGAACCGCA GTTTAGTTGC AAAGCCAACC CAGGTATTTG CTGAACAACC AGCAGCACAA 
GCAGAACAAA CTGTAAGTGA ATAA 

 

Protein sequence

MFQDNPLLAQ LKQQIQENLP KKEGSIKATD KGFGFLEVDS KTSFFIPPAY MKKCMHGDKV 
VAIIRTENER EVAEPQELLE QAVTRFIGRV KMFKGKLNVA PDHPQLKKLS LKAKLKKGLK 
PDEFAEGDWV VAHLIRHPLK GDNSFFVEIS EKITDANDKI APWWVTLAQN DLPNSEPAGI 
ENWELKDDAD LERVDMTHVP FVTIDGESTK DMDDALYAKK TESGDFELTI AIADPTAYIT 
PEDEMDKVAR ERGYTIYLPG RNIPMLPRDL ADNLCSLIEG EIRPAICCTV TVNKDGVIGD 
DIKFFAANIK SHARLAYDHV SDWLENGSSE AWQPSEEIAT IVRDLYDFSL ARAEWREKNA 
VVFPDRPDYR FELSEDNDVV AIHADMRRSA NRLVEESMIT ANICAGRTLR DKFETGVFNT 
HAGIKTEKIE EVVQLVNPEG ALEFTAESIT TLEGFAALRR WLAAQETSYL DNRIRKFQAY 
SEVGNQPLPH YAMGLDIYAT WTSPIRKYGD MINHRMLKAV ILGKEPVQKP DDQVGEELAL 
HRKHHKIAER NVSDWLYART LADEPNKKTC FTGEIFDINR AGARVRLLEN GAAAFIPGAL 
ILDNKERIEC NGDNGTISID KEVVYKLGDT LEIVLADVNQ ENRSLVAKPT QVFAEQPAAQ 
AEQTVSE