| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001429 |
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| Symbol | |
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| ID | 8559741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | - |
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| Start bp | 1620265 |
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| End bp | 1622085 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646409098 |
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| Product | GGDEF family protein |
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| Protein accession | YP_003288577 |
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| Protein GI | 262396724 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000304486 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCAGG TACAAATCAG TTTCCACAAA ATTGATGAAA TATTGAAGCT AAACGGCACG
GCTCAGCTAA ACCGAGTCAC GTTAGATATT CATCAACAAT TGCAGAGCCA TTGCACTTGC
GTTGTAGAAG TTGCGCATCT TCAACATTCG GCTCATACCA TCTCCTTCGC TAGCAATGGA
AAAATTACAG ACAATCTAAG CTACCACCTT TCAGGCACCC CCTGTGAAAA AGTGGCAAAA
GACATTGGCG AACATATTTT CTATCAGGAC CAAGTTTACA AACGCTTTCC TGAAGATCAG
ATGTTTCAAG AGGATGGTAT TCAAGCTTAC ATTGGTCTGC CATTAAAGAC ACAAAATGGC
GAGGTTCTGG GAATTTTATT GTCCACCTTT ACCCGAAGCA TCCACGCTAA GGAAGCGCAA
GATATCCTCG ACTTCCACCG CTTTTATGCC AATGTCATTA TTCACAGCTT ACGTGAAAAG
TGGGTCAGTG AACGTTCAGA TAAGCTTCTT AATCAGCTTA GCTATGAAGT ATCGCATGAT
AACCTAACTG GGCTGCTCAA CCGTAGCTGC TTAGCTGATA CCTTGGAGAC ATTGACGCAA
CAGGCCACTC GTCCATTCAG TTTGGCTTAC CTAGACATCG ATAACTTCAA ATCGATCAAT
GATATCAACG GAAACTACAT CGGCGACCAA ATTATTAAGT TTACGGCAAA CGCCATTCAA
CAAAGCTTGT CATCGCCAAA CAACGCTTTT CGTGTCGCTG GAGATGAATT CGCCTTCATT
ACTTACGATG AAGATCCTGT CGCCGTGTGT CAGGAAGTAC TCGACAAAAT TGAAAGCGGC
TACAGCGACA AATCTAACCG AATTTCTTTC ACTGTTAGTA TTGGTATCGC GCGCGCACCA
GTACATATGT TGAACAGCGA TGAGCTAATT TTGAATGCCA GTCTCGCTCT CAAAGACTGT
AAAAAACATC GCGATACACG AATTCAGCAT TACGACACAC ATCTTAGCGC CCTTTATCAC
CGTAGAACGC AGCTTATTGA AGCCATGCGC ATTCAACTAA GCGCTGACAT ACATGATAGC
GAAGAGCTGT ATGTCGTTGT TCAGCCAATC GTAGATATCA CAAGTGATCG CTGGAATTAC
TTTGAAATCC TAGCCCGCTG GAACAGCAAT GTTTACGGGA ACATATCTCC TGCGGAATTC
ATTGAAGCTG CCGAACAATC AGGCCTGATT ATCGAGTTGG GTGAACGTAT TATTGAACTC
GCATGTATCG CAAAACAAGA GCTAGAAGCC AACTTAGGAT ACAAAGTTAA ACTCTCTATC
AATTGCTCTG CGTATGAGCT GGTCGACTCT AACCGCTATA TTAACCACCT AACTAACATG
GTTGAAAAGT ATCAGCATGA AGCAAAAGAC TTTGTTATAG AGCTCACCGA GACCGTTTTA
CTCTCGCAAA GTGGCCGTGA ACAGATGGTA CTTAACTCAT TGCGGTACTT AGGTTTTAAA
GTCGCGTTGG ATGATTTTGG TACGGGATAC TCAAGCTTGA ACTATATACA CAATTATCCG
ATTGATAGCA TTAAAATCGA TGCAACCTTC GTTCAAAACA TGCTCTCAAA TACAACCTCT
GAACAAGTGG TGTTTTTGAT AGCGCAATTG GCAGAACTGC TTGATGTGGA TTTGATTGCC
GAAGGCGTAG AAGACGATAG AGCACTACAA AAGTTAATTG AAATGGGCTG CCACTACATT
CAAGGCTATT TCTACTCTCG CCCACACAGT GTTGATGAAA TCGTACACCT GATAAATGAA
CGTGAAGTGC GGAGCGCCTA A
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| Protein sequence | MGQVQISFHK IDEILKLNGT AQLNRVTLDI HQQLQSHCTC VVEVAHLQHS AHTISFASNG
KITDNLSYHL SGTPCEKVAK DIGEHIFYQD QVYKRFPEDQ MFQEDGIQAY IGLPLKTQNG
EVLGILLSTF TRSIHAKEAQ DILDFHRFYA NVIIHSLREK WVSERSDKLL NQLSYEVSHD
NLTGLLNRSC LADTLETLTQ QATRPFSLAY LDIDNFKSIN DINGNYIGDQ IIKFTANAIQ
QSLSSPNNAF RVAGDEFAFI TYDEDPVAVC QEVLDKIESG YSDKSNRISF TVSIGIARAP
VHMLNSDELI LNASLALKDC KKHRDTRIQH YDTHLSALYH RRTQLIEAMR IQLSADIHDS
EELYVVVQPI VDITSDRWNY FEILARWNSN VYGNISPAEF IEAAEQSGLI IELGERIIEL
ACIAKQELEA NLGYKVKLSI NCSAYELVDS NRYINHLTNM VEKYQHEAKD FVIELTETVL
LSQSGREQMV LNSLRYLGFK VALDDFGTGY SSLNYIHNYP IDSIKIDATF VQNMLSNTTS
EQVVFLIAQL AELLDVDLIA EGVEDDRALQ KLIEMGCHYI QGYFYSRPHS VDEIVHLINE
REVRSA
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