| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001385 |
|---|
| Symbol | |
|---|
| ID | 8559697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 1567411 |
|---|
| End bp | 1568553 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646409054 |
|---|
| Product | probable RND efflux membrane fusion protein |
|---|
| Protein accession | YP_003288533 |
|---|
| Protein GI | 262396680 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCA AATATAAATT TGCGTTGGTA TCTATTGCTA TATCTTCTGC ATTACTATCA
GGATGCAAAA CTGGCGATAT CGCAACGAAA ACTGCCCAAG CACCCTCTGT TGAAACCGTT
ACTCTAACCG AAACAAAAAT CACTCCTTAT CATACTTTTA TCGGTCGAAC TGAAGCGGTA
AATGACGTTG ATATTATGCC TCGAGTCGGT GGCGAATTAA CCGCGATTCA TTTTAAAGAT
GGCGATATGG TCGAAAAAGG CCAATTGCTG TTTGAAATCG ACGACCGTCC TTACAAAGCG
GCACTGGCGT ATGCAAAAGC GTCGTTGCAA AAAGCCAAAG CACAACTCGT TCAAACTACG
CGTGATGCAG AACGTGTGAA GAAACTCATC AAAGATAAAA GCATCAGTGA GCAGCAATAC
GATGATGCCA TTGCTGCGCA CGCCGCAGCG ATTGCTTCGG TAGAAGAGGC GAAAGCGACG
CTGGTTTCAG CAAGGCTCGA TCTTGAATTT AGCTCTGTGC GTGCTCCTTT CTCTGGCCGC
GTGGGTTTCA GCAACTTCCG AGTGGGTGAC CGTATTTCGA AAATTCAACT CGTTCCTCTT
GTTTCGATCA CTCAAATCGA CCCAATTCGC TTTGGCTTTG ATGTGGATGA GAAGCTCTAC
CGCCGCGTAA GAAGCGCGAT TGATGTGGCT CATCGTAACG ATGACAAACT GGATGTTGAT
TTAACACTGA CGCTTTCAGA CGGTTCATTG TATCCGCTTG ATGGCAAGAT CTACGCCGTT
GGCAACAAGA TCGATTTAGA AACAGGCTCA ATTCGAGCAG AAGCACAATT CGATAACCCA
ACTTACGCGC TTATGCCGGG TGAATATGGC AACTTGACCA TCAAGCTGCG CAACAAAACC
ATTGATGGTT TGCTTATCCC ATCGGCGGCT GTTCAGCAAG ACCAAGCGGG TGACTACGTC
ATGGTGGTTG GTGATGATCA CGTGGTGTCT CGTCGTAACG TTGAACTCGG TCAGACCTAC
GGTGTGAAAC GTGCTGTGCT GACTGGTTTG GCGGCTAACG AAAAAGTCAT CGTCAATGGT
CTACAAAAAG TGCGTCCGGG TGCAACGGTG AAAGACGTTG AACTACAGAG TGAACAAGGC
TGA
|
|---|
| Protein sequence | MKAKYKFALV SIAISSALLS GCKTGDIATK TAQAPSVETV TLTETKITPY HTFIGRTEAV
NDVDIMPRVG GELTAIHFKD GDMVEKGQLL FEIDDRPYKA ALAYAKASLQ KAKAQLVQTT
RDAERVKKLI KDKSISEQQY DDAIAAHAAA IASVEEAKAT LVSARLDLEF SSVRAPFSGR
VGFSNFRVGD RISKIQLVPL VSITQIDPIR FGFDVDEKLY RRVRSAIDVA HRNDDKLDVD
LTLTLSDGSL YPLDGKIYAV GNKIDLETGS IRAEAQFDNP TYALMPGEYG NLTIKLRNKT
IDGLLIPSAA VQQDQAGDYV MVVGDDHVVS RRNVELGQTY GVKRAVLTGL AANEKVIVNG
LQKVRPGATV KDVELQSEQG
|
|---|
| |