Gene VEA_001309 details

Gene Information

• Locus tag: VEA_001309
• ID: 8559621
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013457
• Strand: +
• Start bp: 1491942
• End bp: 1493813
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 646408978
• Product: phosphotransferase system fructose-specific
• Protein accession: YP_003288457
• Protein GI: 262396604
• COG category: [G] Carbohydrate transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG1299] Phosphotransferase system, fructose-specific IIC component; [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
• TIGRFAM ID: [TIGR00829] PTS system, fructose-specific, IIB component; [TIGR00848] PTS system, fructose subfamily, IIA component; [TIGR01427] PTS system, fructose subfamily, IIC component

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACATCA CAAACCTAAT TGAGCTAGAA ACGATATGCT TAGATCTAAA AGCTCAAACC 
AAAGATGAAG CGCTCAAAGA GCTGGTTGAG ATGCTAGAAG CCGCCGGCAA GCTCAATAGT 
CAAAGCCAGT TCTTGGCAGA TATCTGGAAA CGAGAAGAGA TCGGTAACAC AGGATTTGAT 
GATGGTATTG CGATCCCTCA TGCCAAAAGT GATGCTGTAG CGCAACCAGC TGTCGCAGTC 
GGGATCAGCC GTAATGGGAT TGATTATGGC GCCGAAGATG GCGAGCTGTC CGATGTGTTT 
TTCATGCTGG CGTCCCCAGA TGGTGATGAT CATCATCACA TTGAAGTATT GGCACAAATT 
TCCACCAAAA TTATCGAAGA CGGCTTTGTT GAAAAGCTCA AGTTGGCTCA ATCGCGAGAA 
GAAGCGCTTG AGATGCTGAC TGATATTCAA ACCCAATCCA ATGAATTTCT CCCAACTTCT 
TTAGAATTTG CATCAGAACC CCTGAGCCCT TGGGCGCAAA AACTTGGTCG CATTAAAGAG 
CACCTGCTGT TTGGCACATC CCACATGATC CCGTTTATCG TTGCGGGCGG TGTGCTGTTG 
TCGTTGTCGG TGATGATCTC TGGTCACGGT GGTGTACCAC AAGAGGGCAT TCTGGCCGAT 
ATTGCCCAAA TGGGGATTGC TGGCCTGACA TTGTTTACTG CCGTGCTTGG CGGTTACATT 
GCTTATTCCA TTGCCGACAA GCCGGGCCTT GCACCGGGTA TGATTGGATC TTGGATTGCG 
GTCAGTCATT ACAATACGGG TTTTTTAGGT GCGATTGTGG TCGGCTTTTT TGCTGGCTTT 
GTCGTTTGGC TATTAAAGAA AATTCAGCTA TCAGACAGCA TGAGTTCGCT TGGCTCGATT 
TTTATTTATC CGCTAGTGGG GACGTTTGTT ACTTGTGGCG CGGTGATGTG GGTGATAGGT 
GCTCCGATTG CCAGCGCAAT GACCACCATG AACGAGGTGC TGACGGGCAT GGCGGGCTCA 
GGCAAAGTAA TGCTCGGAAC TGTGCTTGGG GCAATGACCG CGTTTGATAT GGGCGGCCCA 
ATCAACAAAG TGGCGACGTT GTTTGCTCAA ACCCAAGTGA ACACGCAGCC ATGGTTGATG 
GGCGGGGTCG GTATTGCGAT TTGTACGCCG CCATTGGGTA TGGCACTAGC CACGTTTTTG 
GCGCCGAGTA AATTCAAGCG AGATGAACGC GAAGCGGGGA AAGCCGCAGG TATTATGGGG 
ATGATCGGTA TTAGCGAAGG TGCGATTCCT TTTGCCGCTG GCGACCCTGC ACGAGTATTA 
CCCGCTATTG TGGCGGGGGG CATCGTCGGT AACGTGATTG GCTTTATGTT CCACGTAATG 
AACCATGCAC CGTGGGGCGG TTGGATTGTT CTCCCTGTTG TGGATGGAAA AATTGGTTAC 
ATCATCGGCA CGATTGCGGG CTCTGTTACC ACGGCGTTGA TCGTGATTGC ACTAAAGAAA 
ACCGCAACCG AAGATGAAAG CTACACAGGT CATTCTCAAG TATATGGTTC CGTTCAAGGC 
GAAGGTGAGG CGGATGTTTT GGCGGTTACA TCTTGTCCAT CAGGTGTGGC ACATACGTTC 
TTAGCGGCTA AGTCATTGGA AAAAGCGGCT TGTGCACTCG GCATTAAGAT TAAAGTCGAA 
ACCCAAGGCG CGAATGGCGT CATCAACCGA ATTACCGAGA AAGACATCGA GAAAGCGAAG 
TTTGTGATTT TTGCTCACGA TGTGGCGATT AAAGAACCGG AACGTTTTCG AAAAATCCAA 
GTCTTGGATG TCAGTACCAA GGATGCCATG TTGAACGCCA CGGCTTTGTT GCAAGCTCGT 
AGAGTGTCTT AA 

 

Protein sequence

MDITNLIELE TICLDLKAQT KDEALKELVE MLEAAGKLNS QSQFLADIWK REEIGNTGFD 
DGIAIPHAKS DAVAQPAVAV GISRNGIDYG AEDGELSDVF FMLASPDGDD HHHIEVLAQI 
STKIIEDGFV EKLKLAQSRE EALEMLTDIQ TQSNEFLPTS LEFASEPLSP WAQKLGRIKE 
HLLFGTSHMI PFIVAGGVLL SLSVMISGHG GVPQEGILAD IAQMGIAGLT LFTAVLGGYI 
AYSIADKPGL APGMIGSWIA VSHYNTGFLG AIVVGFFAGF VVWLLKKIQL SDSMSSLGSI 
FIYPLVGTFV TCGAVMWVIG APIASAMTTM NEVLTGMAGS GKVMLGTVLG AMTAFDMGGP 
INKVATLFAQ TQVNTQPWLM GGVGIAICTP PLGMALATFL APSKFKRDER EAGKAAGIMG 
MIGISEGAIP FAAGDPARVL PAIVAGGIVG NVIGFMFHVM NHAPWGGWIV LPVVDGKIGY 
IIGTIAGSVT TALIVIALKK TATEDESYTG HSQVYGSVQG EGEADVLAVT SCPSGVAHTF 
LAAKSLEKAA CALGIKIKVE TQGANGVINR ITEKDIEKAK FVIFAHDVAI KEPERFRKIQ 
VLDVSTKDAM LNATALLQAR RVS