| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001278 |
|---|
| Symbol | |
|---|
| ID | 8559590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 1452013 |
|---|
| End bp | 1453620 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646408947 |
|---|
| Product | ABC-type protease/lipase transport system ATPase and permease component |
|---|
| Protein accession | YP_003288426 |
|---|
| Protein GI | 262396573 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCAAG TGTACAACCG AGTGATATCC TCCTATTCAA CCGATACTCT ACTTTTGCTC
ACTATTATCG TGATTGTCGC GTTACTAACC ATGTCGATTA TTGATATCGC TCGCGCGCAA
ATGAGTAAAT CATTTGGTTA TTGGATGGAC ACCAAACTGT CCACTTTTAT GCTTAAGCGC
AGCATTCAAT ACCAATCGCA CACAGGGAAG AGTTACACCT CGCAAACGCT GCGAGACATT
CAGAACATCA AAAGCTTTTT GAGCAGCCAA GCACCCTATC CACTATTGGA TGCGCCTTGG
ACACCGCTGT TTATTTTGTT TGTATATTTA TTACACCCAG TATTGGGTCA CATCGCGTTA
CTCGGGTCTA TCGTATTGTT TAGTCTCGGG CTACTCAATG AGCTAATGAC GCGTAAAACC
ATGCAAGAGA GTGAAGTTAG GGCGATCTCT CATATCAACA ACGCCGAGCT AGCCACGCAA
AATGCCAATT CAATTCTTGC GATGGGGATG ATGAACGCGT TTTTAGAGAA ATGGCAGTCG
CGCGTGAATG AAGTCAATAT GCTCGAAGAG CGAGTGGCGG GTAAGTCCAT TTACATGGCT
AACTTTTCTA AGTTTGTACG TGGTTCACTA CAGATCTTTT TGTTGGGAGG CGGAGCATGG
TTAGTGATCC AACATGAGAT TACTGCGGGA GCGATGATCG CGAGTTCCAT TTTAATGAGT
CGGGCGCTCT CGCCGATGGA GCAGGCGATT GGAACATGGC GAAGTGCTAT GTCTGCTAAA
GGCGCGTATA AACGACTAAA AGAAATCGAC GCAATCGTAC GCCAAGATGA ATCGAATATG
CCACTGCCAA AGCCAAAAGG ACACTATGAA CTTACTGGAC TTGCTTATCG CCATCCTGGC
ACAACAGAGC CTGTACTCTC ATCGATCAAC TTATCTATTC CTCCCGGAGT CGCTGTCGGA
GTTATTGGCC CTTCTGGTAC TGGTAAATCG ACGTTTGCTC GGTTGTTATT AGGTACGATC
AAGCCACTAG CGGGTAAGGT TACGCTTGAT GGTATGGAAG TGTCTACTTG GGCATCGGAA
GACCGCGGCG CCCATTTTGG TTATCTCGCT CAAGAAGTAG AGTTGTTTCC TGGCACAATT
CGGGAGAACA TCGCGCGCTT CAAAGAGGAA GACCCCGCTA AAGTCATCAA GGCGGCGCAA
CTAGCAGGAT GTCATGAATT AATACTCAAG AAAAATAAAG GTTATGATTT CGTTATTGGC
GAAAATGGCC GTGGTTTATC TGGAGGAGAA AGGCAGAGAA TCGCACTTGC TAGAGCCGTT
TATGGCGATC CACCTATTGT GATTTTCGAT GAAGCTAATG CCAACCTTGA TGGTGAAGGA
GAGGCTGCAT ATCAACGTTT GATTGCCCAT TTAAAGGCGC AAGGCTCAAC GATTATCGTC
ATTGCCCATA ATCCGAGTAC ATTACGACAA ATGGATAGAT TGCTGTATTT GGCTGAAGGT
CGAGTCAAAT TATACGGTGC TAAAGATGAA GTATTAAAAC GCTTGATGGG CGAAGAAAGA
ACAGATATTC CAAGGGTAAG AAATGAGCAA TCAACTGCCA GCCGTTAA
|
|---|
| Protein sequence | MLQVYNRVIS SYSTDTLLLL TIIVIVALLT MSIIDIARAQ MSKSFGYWMD TKLSTFMLKR
SIQYQSHTGK SYTSQTLRDI QNIKSFLSSQ APYPLLDAPW TPLFILFVYL LHPVLGHIAL
LGSIVLFSLG LLNELMTRKT MQESEVRAIS HINNAELATQ NANSILAMGM MNAFLEKWQS
RVNEVNMLEE RVAGKSIYMA NFSKFVRGSL QIFLLGGGAW LVIQHEITAG AMIASSILMS
RALSPMEQAI GTWRSAMSAK GAYKRLKEID AIVRQDESNM PLPKPKGHYE LTGLAYRHPG
TTEPVLSSIN LSIPPGVAVG VIGPSGTGKS TFARLLLGTI KPLAGKVTLD GMEVSTWASE
DRGAHFGYLA QEVELFPGTI RENIARFKEE DPAKVIKAAQ LAGCHELILK KNKGYDFVIG
ENGRGLSGGE RQRIALARAV YGDPPIVIFD EANANLDGEG EAAYQRLIAH LKAQGSTIIV
IAHNPSTLRQ MDRLLYLAEG RVKLYGAKDE VLKRLMGEER TDIPRVRNEQ STASR
|
|---|
| |