Gene VEA_001244 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_001244 
Symbol 
ID8559556 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013457 
Strand
Start bp1408954 
End bp1410084 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content50% 
IMG OID646408913 
Productmultidrug resistance efflux pump 
Protein accessionYP_003288392 
Protein GI262396539 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTAT TGCTGATTCT GACTTATACA GCCCTTTGTA TCGCCATTTT TAAAGTCTTT 
AATATTCCTT TGAACAAATG GACCGTACCT ACAGCCGTAC TTGGCGGCGT AGTGTTGGTG
GGCACACTCG TCCTTCTTAT GAATTACAAC CACCCATTTA CTCAGTTAGG TAACCAAGTG
TTCCCAACTA CGCCTATCGT CTCTGGTGTA CGTGGCCGCG TTGTGGAAGT GCCCGTTCAA
GCGAACCAAC CGCTCAAAAC CGGCGATATT CTTTTCAAAA TCGATCCTGT GCCTTTTGAA
GCAGAAGTCG CACGCCTTGA AGCGAAAGTG AAAGAAGCAA GCCAAGGTGC GTTGGGTTTA
GAGTCTGACT TGAGAGAAAC AGAAGCGGCG GTTTTGAAAG CGCAAGCCGA TAGAGATAAA
GCACAAAGAG AATTTAGCCG ATATCAAAGG GGCTTTGATC GCGGCGCATT TACGGAACAA
GATTTAGATA CTCGACGCCA AGCGTACAAA GCGGCAGAAG CCATGCTAGA CGTTGCCATT
TTGCAGCAAG AGCAAGCACA GATCGCATTA GAGTCGGAAA TCGGCGGTGA AAACACCCAA
GTCGCGCAAC TTCTCGCAGA GCTGCGTAAA GCAGAGTTTA ACCTAGAGCA AACCGTCGTT
CGTGCGCCAA CCGATGGTTA CGTTACGCAA TTGGCTTTGC GCCCTGGTGT GATGGCTGTG
CCATTGCCGC TTGCCCCAGC AATGACCTTC GTGCATACCG AAGACATTAC GTACACGGCG
GCGTTCAGAC AAAACTCGCT ACAACGTTTG AAGGCAGGCT TTGAAGCGGA GTTTATGTTC
CGTGCGATAC CGGGCAAGGT ATTCCGTGGC GAAGTCATCG ACGTGATTCC AGCCATTGGT
GAAAGCCAAA TTCAAGCCAG AGGTGCTCTG CTTGGTACCG ATGCCCTGCG CACAAGCGGA
CGTGTATTTG CGAAGCTGAA AATCACGGAC GATTTGAGCG AATACCACCT ACCAATGGGT
ACCGCGGTTG AAGTCGCCGT TTACTCAGAC AGCTTTACTC ACGTGTCAGT GATGCGCAAA
GTGCTGATTC GCATGAAGAG CTGGCAGAAC TATTTGTACC TAGACCATTA A
 
Protein sequence
MDLLLILTYT ALCIAIFKVF NIPLNKWTVP TAVLGGVVLV GTLVLLMNYN HPFTQLGNQV 
FPTTPIVSGV RGRVVEVPVQ ANQPLKTGDI LFKIDPVPFE AEVARLEAKV KEASQGALGL
ESDLRETEAA VLKAQADRDK AQREFSRYQR GFDRGAFTEQ DLDTRRQAYK AAEAMLDVAI
LQQEQAQIAL ESEIGGENTQ VAQLLAELRK AEFNLEQTVV RAPTDGYVTQ LALRPGVMAV
PLPLAPAMTF VHTEDITYTA AFRQNSLQRL KAGFEAEFMF RAIPGKVFRG EVIDVIPAIG
ESQIQARGAL LGTDALRTSG RVFAKLKITD DLSEYHLPMG TAVEVAVYSD SFTHVSVMRK
VLIRMKSWQN YLYLDH