Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_001218 |
Symbol | |
ID | 8559530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | + |
Start bp | 1377872 |
End bp | 1380286 |
Gene Length | 2415 bp |
Protein Length | 804 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646408887 |
Product | CsuD |
Protein accession | YP_003288366 |
Protein GI | 262396513 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAGA TTTTATATCT ATCTTGTTTA TTTACCAGTA TGACGCCTGG CGTGGGTTGG TGCGACAACG TAGTGACCCA TTTATCGCAG TTACCTAGTC CTGAAAACTT TTCTTATGAG AACTTTGAAA ATATTCATTT GTCGTTAGAA CTAGTAATTA ATCAACGACC GACTGGTTTA ATCGCGGATG TTGAACGTAA AGGCGAGCGC TACTTCGTGT ATAGAGACGA TTTACTGTCT GCTGGCGTGG TCGCGGATGT ATTACCTGGG ACGCAAGAGA AGTTAGACAT AACATCAATA TCGGGTGTAG AGGTCGATTA TTTGCAATCG TCACTGCAAT TATTAATCAC AGTGCCTCCT AATTGGTTGC CGATGCAACG CTTTTCTGCG CAGAACAGGA GGCGTTTTTC GCCCGCTAAA TTCGGAACTG GTGGGTTATT TAATTACAGT GTGTTTGGTG TTTATGATCA CGATAGTAGT CAAAAAGAAG TATCTATTAA ACACGAATTG AGAGCCTTTT CCGAATTCGG CGTACTTTCT ACGACGGGAA TATTTAAATC TAACCTTCAT CGAGACGTTC AAGCGCAACA AAGTAATAAA TATACGCGCT TCGACACGAG GTACGAATAT GTTGATCAAA GTCGTCGATT GCGCTTTGAA GTAGGGGATT ACATTGTGAG GCCCCTTGCG TGGAGTCAAC CAGTTCGAAT GGCTGGTATT CAACTGTCAC ATGACTTCTC TATGCGTCCA GACGTGGTTA CCGCACCTTT ACCTGCATTT TATGGCGAAG TAACTGCTCC CACGACGTTA GATTTATTTG TAAACGGATT AAAAACCGAT TCAATGTTTG TGGGGCCGGG ACCGTTTGTT ATCAATGATA TTCCAATGGT ATCGGGAGCT GGTGAAGCGA CAGTGATTGC AACGGATGCC CAGGGAAGGC GGACTGCAAT GACCAGTCCA TTTTTCCTTT CAGCTAACTT GCTGAAGGCT AACTATACCT CTTACAACGC TAGTTTTGGT GCTTTACGCC GAAACTATGG CAACGCTTCA AATGACTATG GCGATGGTGC TGTTGTCGCA GCTGCGAGGC ACGGAATGAC AAACTGGCTA ACGTTGGAGG CACAAACCGA AGCGAAAGAT GACTTAATTG TTGCGGGAGT CGGTTTTGTT ACCAACCTAT TCAATATGGG AACGATTGAT GGGGCGGTAA GGTTTAGCAA TTATGAGCAG AGAGCGAGTT CCTATTCAGT TGGTTATAGT TATCAATCTC GAATGTTTAG CTTTGCCGCT CGTACCCAAG TTGAGAGCGA GGGATTTTAC ACCCTCTCCC AAACACCAGA GAGCTTGAGA AGTGACGGCA CTAACGAGCG AGAGAATTTG TCTCGGCATG TCTCTCAGAT AAATGTTGGC GCCCGGCTGA ATGAGTTGGG TTCGTTATCA GGGGGATACT TTGATGTTCA GCAAACCGAC TCTCGATCGA GAATACTTAA TGTAACTTAC AGTCGCTCGC TTCCGTTCGA TATCAACATG TCATTATCGT TTAATCGGAG CATAGGTGGA GAGGCCGTTA CGCTAGCACA ATTCTCATTA CCTTTGAGCG CCTTCTCTGG TAGCGCGGGA TTAACCATGA AGCGTGAAAG CGATGGTCAT CTTAGTGGCC GTGCTAGTGT TAGTCGACTT GCGCCGATTC GAGGTGGTTG GGGAATCAAC TTAGCGCATG ATATTAATGA AAAGCCTGAC AATAGAAAGC AGGCCGATGT TACTTACCGA GCCTCTTGGG CGGAGTTCCG AGCGGGCTTA AACGGGACGA GTGGTAATTA CGATTATTTT GCCGAAATGT CGGGTTCGGT TGCGTCACTC GATGGTGAAA TATTCCCTGC AAATAATGTG TACGATAGTT TCGCTGTTGT CAGTACTAGC GGTTTTGAAG GTGTGCCCGT CAAATATGAG AATCAAGTCG TTGGATTGAC TGATGATGAC GGTTACTTAC TTGTGCCGTG GGCAATGGCA TATTACACCG CAAAATATGA AATTGATCCG CTTAGATTAC CAGCCAATGC TTTTTTCCCA ACAACAGAAC AATACGCGTC GATACATTCT GGGTACGGCT ATTTGCTCGA GTTCCCAATA GCTTTGCAAG TTGCGTTGAG TATGGAGGTT GTTGATGAAA ATGACGCCTA CTTGCCGTTA GGAACTTATG GTCAATCAGA TACTGGAGTG GTTGGGCAAA TTGGTTGGGA TGGAGTAACG TATTTTGAGG GGCGTAATGT AGGTGAGTAC ATTATCTTTT ACCCCGAAGG CTTTCCACCA TGTAAAGTAT TTATAACGGG ACTCTATCAA ACGCGGAGCG AGAAAATACA GACATTAGGT AAACAAGTCT GCACGAAAGA GCAAAAAGCA GAGGTACAAT TATGA
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Protein sequence | MNKILYLSCL FTSMTPGVGW CDNVVTHLSQ LPSPENFSYE NFENIHLSLE LVINQRPTGL IADVERKGER YFVYRDDLLS AGVVADVLPG TQEKLDITSI SGVEVDYLQS SLQLLITVPP NWLPMQRFSA QNRRRFSPAK FGTGGLFNYS VFGVYDHDSS QKEVSIKHEL RAFSEFGVLS TTGIFKSNLH RDVQAQQSNK YTRFDTRYEY VDQSRRLRFE VGDYIVRPLA WSQPVRMAGI QLSHDFSMRP DVVTAPLPAF YGEVTAPTTL DLFVNGLKTD SMFVGPGPFV INDIPMVSGA GEATVIATDA QGRRTAMTSP FFLSANLLKA NYTSYNASFG ALRRNYGNAS NDYGDGAVVA AARHGMTNWL TLEAQTEAKD DLIVAGVGFV TNLFNMGTID GAVRFSNYEQ RASSYSVGYS YQSRMFSFAA RTQVESEGFY TLSQTPESLR SDGTNERENL SRHVSQINVG ARLNELGSLS GGYFDVQQTD SRSRILNVTY SRSLPFDINM SLSFNRSIGG EAVTLAQFSL PLSAFSGSAG LTMKRESDGH LSGRASVSRL APIRGGWGIN LAHDINEKPD NRKQADVTYR ASWAEFRAGL NGTSGNYDYF AEMSGSVASL DGEIFPANNV YDSFAVVSTS GFEGVPVKYE NQVVGLTDDD GYLLVPWAMA YYTAKYEIDP LRLPANAFFP TTEQYASIHS GYGYLLEFPI ALQVALSMEV VDENDAYLPL GTYGQSDTGV VGQIGWDGVT YFEGRNVGEY IIFYPEGFPP CKVFITGLYQ TRSEKIQTLG KQVCTKEQKA EVQL
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