Gene VEA_001107 details

Gene Information

• Locus tag: VEA_001107
• ID: 8559420
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013457
• Strand: +
• Start bp: 1271666
• End bp: 1273726
• Gene Length: 2061 bp
• Protein Length: 686 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 646408778
• Product: periplasmic alpha-amylase
• Protein accession: YP_003288257
• Protein GI: 262396404
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0600503
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTGA ACCTGATTAC CACTACTTTA CTGCTTGCGT CGGCAGGTGC CATCGCCGAG 
CCTAACATCA CCATTTCTAC CACGACCAAC AGCCGTGACT TCCCGCTAAG TGCAGAGCAG 
CCTTTGGTTG TGCCTCTAAC CAAAGACGGA TACACGCTTA AAATCACGGG CGTTGAAGGT 
GATTGCGTTG CACCCGATGG TCAGAAAGTG AAGTTCAACA AACCTCTTGC GCTGAACTGC 
GGAAAACCAA CGGAACTGCC GTTAAAAATC CGCTTTACCG GCGATTACTC TTTTGCTTTT 
GATGCAGAAG CCAAAACACT GCGTTTTAAG CGTGAACCTA AGAAAGCCGC CAAAACTGAA 
TTTAAACGCC CAATCCCACA AGTGCAATGT GAGGTTTACC AAGGCGGAGA AGTCACCATT 
GCGTTAGGTG ATAGTTTCCC AGATGGTACC AAGTTGCGTG ATGCCTATTC TGGTCAAATG 
GTCGAAGTAA AAGATCAGCA AGTATCGCTG ACGCCAAGCA AAGACTCTGG CGGCCTAGTG 
CTTTTAGAGC CTGTACAGAA AACCAAAGAA GCGGTGCTAT TTGATTACCG AAACGCGAAC 
ATTTACTTCG TGATGGTTGA CCGTTTCAAC AACGCAGACG CAAGTAACGA CAACAGTTAT 
GGTCGCAAAA AAGACGGCAA AGAAGAGATA GGTACTTTCC ACGGCGGTGA CCTTAAAGGC 
GTGATTGAGA AACTGGATTA CATTAAGAGC CTAGGTACAG ACGCGATTTG GTTGTCGCCA 
ATCGTTGAGC AAGTGCACGG CTTTGTCGGT GGTGGCGATA GTGGTTCATT TCCGTTTTAT 
GCATACCACG GCTACTGGAC GCGCGATTTC ACCAAGATTG ATGAGAACTT CGGTAACGAA 
GAAGATTTGA AAACGCTGGT GGAAGAGGCG CACAAACGTG GCCTCAAAGT CTTGATGGAT 
GCGGTTATCA ACCATTCTGG TTACTCAACA TTGGCGGATC TACAGTTCGA TGGTATCGAT 
GTGTTAAAGC CTAATGCCGA TCTGCCCAAG AAATGGGGCG ACTGGCAACC AAAAGCGGGT 
GAAAATTGGC ATAGCTATCA CCAGAATATT GATTATCAGA GTCCGAACTG GGCTAAATGG 
TGGGGCGGTG ATTGGGTAAG AACCGGCTTG CCAGGTTACC CAGCTCCGGG CAGTAGCGAC 
ATCACCATGT CATTGGCGGG GCTGCCTGAC TTTATCACTG AACAAGGCAA AGCTGTAAAA 
CCAGCTCAGT GGCTATTAGA TAACCCTGGC ACTCGCGTAG AAGCTCGTGA CAACTACACC 
GTGGCGGATT ACTTGATTGA GTGGCAAACC GATTGGGTGA AACGCTTCGG CATTGATGGC 
TATCGCGTCG ATACGGTGAA ACACGTCGAA GGTGAAGTTT GGAAGCGTCT AAAAGAAGAA 
GCATCGAACA GCTTAGAACA GTGGCGTAAA GAAAATGGCA AATCAGGTCA GCCGTTCTGG 
ATGATGGGCG AAGTCTGGGG ACACACCGCG TATCGCAGCC CTTATTTCGA TGATGGTTTT 
GACGCGTTGA TCAACTTCGA TATGCAGAAG AAGCTAGACA AAGGCGCGGC GTGCTTTAGC 
CAAATGGCAG ACACTTACCA AAGCTATGCG GAAACTATCG CGAACGAGAA AGACTTCAAC 
CCAGTGAGCT ACATGTCTTC CCACGATACC GAGTTGTTCT TCTCTCGCTT CAAAGACCAC 
GGCATGCAGC GTAACGCCGC GAATGCACTG CTTCTGAGCC CAGGTGCTGT TCAGGTTTAC 
TACGGTGATG AAGTGGGTCG TAACATTGGT CCTTACGCGG ATGATTTCCA CCAAGGCACA 
CGTTCAGACA TGGTTTGGAA ACTATCGGAT GAGAAGCAAG CGCTGCTCAA ACATTGGCAA 
ACCCTTGGTC AGTTCCGTCA AGCACACCCT GCCATTGGCG CAGGTCAGCA TCGAGTGATT 
GAACAGGAAG GCGCGTACGT TTTCTCTCGT TCGCTTGGCA ATGACAAAGT CGTCGTGGCG 
TTTGTAGGAC GTGATAAGTA A 

 

Protein sequence

MKLNLITTTL LLASAGAIAE PNITISTTTN SRDFPLSAEQ PLVVPLTKDG YTLKITGVEG 
DCVAPDGQKV KFNKPLALNC GKPTELPLKI RFTGDYSFAF DAEAKTLRFK REPKKAAKTE 
FKRPIPQVQC EVYQGGEVTI ALGDSFPDGT KLRDAYSGQM VEVKDQQVSL TPSKDSGGLV 
LLEPVQKTKE AVLFDYRNAN IYFVMVDRFN NADASNDNSY GRKKDGKEEI GTFHGGDLKG 
VIEKLDYIKS LGTDAIWLSP IVEQVHGFVG GGDSGSFPFY AYHGYWTRDF TKIDENFGNE 
EDLKTLVEEA HKRGLKVLMD AVINHSGYST LADLQFDGID VLKPNADLPK KWGDWQPKAG 
ENWHSYHQNI DYQSPNWAKW WGGDWVRTGL PGYPAPGSSD ITMSLAGLPD FITEQGKAVK 
PAQWLLDNPG TRVEARDNYT VADYLIEWQT DWVKRFGIDG YRVDTVKHVE GEVWKRLKEE 
ASNSLEQWRK ENGKSGQPFW MMGEVWGHTA YRSPYFDDGF DALINFDMQK KLDKGAACFS 
QMADTYQSYA ETIANEKDFN PVSYMSSHDT ELFFSRFKDH GMQRNAANAL LLSPGAVQVY 
YGDEVGRNIG PYADDFHQGT RSDMVWKLSD EKQALLKHWQ TLGQFRQAHP AIGAGQHRVI 
EQEGAYVFSR SLGNDKVVVA FVGRDK