Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_001038 |
Symbol | |
ID | 8559351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | - |
Start bp | 1176276 |
End bp | 1176761 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 646408709 |
Product | RNA polymerase sigma-70 factor ECF subfamily |
Protein accession | YP_003288188 |
Protein GI | 262396335 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAAC ACAAACGATA CGAAGCACTG ACGAAGGAGC GATACCAAGA TATCTATCGT CTCGCATATT GGCTATGCAA AGATCATCAC CTTGCTGAAG ATTTGGCGCA AGACACCTTC CTGAAAGCGT GGCGATTCTT TGATAACTTA AATGATCCCA ATGCCGCGAA GCCTTGGCTC ATCACCATTT TGCGTCGTGA GAATGCTCGG CGCTTTGATA AAAAGCAGTA CGATTTTGTC GATATTGATG AGTGTGTAAT ACAGGCAAAA ACCTACCCTG GCAGTGACCA CGACATGGCA CAAGATTGGC TTCAAAAACA AATGATGATT CTCGAACCCA AATATCGAGA GCCATTGGTC TTAAAACTCG TAGTCGGGTT TAATCATAAT GAAATTGCTC AAGTATTAGA GCTTAATCAC AACACCGTGG CGACTCGATT ATTCAGAGCA CGCAATCAGA TCATTGCGCA GAGGGAGCGC GATTAA
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Protein sequence | MEKHKRYEAL TKERYQDIYR LAYWLCKDHH LAEDLAQDTF LKAWRFFDNL NDPNAAKPWL ITILRRENAR RFDKKQYDFV DIDECVIQAK TYPGSDHDMA QDWLQKQMMI LEPKYREPLV LKLVVGFNHN EIAQVLELNH NTVATRLFRA RNQIIAQRER D
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