Gene VEA_001038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_001038 
Symbol 
ID8559351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013457 
Strand
Start bp1176276 
End bp1176761 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content44% 
IMG OID646408709 
ProductRNA polymerase sigma-70 factor ECF subfamily 
Protein accessionYP_003288188 
Protein GI262396335 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAAC ACAAACGATA CGAAGCACTG ACGAAGGAGC GATACCAAGA TATCTATCGT 
CTCGCATATT GGCTATGCAA AGATCATCAC CTTGCTGAAG ATTTGGCGCA AGACACCTTC
CTGAAAGCGT GGCGATTCTT TGATAACTTA AATGATCCCA ATGCCGCGAA GCCTTGGCTC
ATCACCATTT TGCGTCGTGA GAATGCTCGG CGCTTTGATA AAAAGCAGTA CGATTTTGTC
GATATTGATG AGTGTGTAAT ACAGGCAAAA ACCTACCCTG GCAGTGACCA CGACATGGCA
CAAGATTGGC TTCAAAAACA AATGATGATT CTCGAACCCA AATATCGAGA GCCATTGGTC
TTAAAACTCG TAGTCGGGTT TAATCATAAT GAAATTGCTC AAGTATTAGA GCTTAATCAC
AACACCGTGG CGACTCGATT ATTCAGAGCA CGCAATCAGA TCATTGCGCA GAGGGAGCGC
GATTAA
 
Protein sequence
MEKHKRYEAL TKERYQDIYR LAYWLCKDHH LAEDLAQDTF LKAWRFFDNL NDPNAAKPWL 
ITILRRENAR RFDKKQYDFV DIDECVIQAK TYPGSDHDMA QDWLQKQMMI LEPKYREPLV
LKLVVGFNHN EIAQVLELNH NTVATRLFRA RNQIIAQRER D