| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000959 |
|---|
| Symbol | |
|---|
| ID | 8559272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | - |
|---|
| Start bp | 1089996 |
|---|
| End bp | 1090889 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646408630 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_003288109 |
|---|
| Protein GI | 262396256 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000225633 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTAA AAGTCTTTCG AACATTTTTA GAGCTGGCAA GGGTTCGTCA CTTCGGACGC
GCCGCTGAGA ATCTTTATAT TACCCAAGCT GCAGTGAGCG CACGTATCAA ACAATTGGAA
AGTTACTTCG ATACGCAATT GTTTATTCGT GATCGAAATA ACATAAAGTT GACCTCTGCA
GGTGAGCGCT TAATCAGTTA TGCAGAGGTG ATGGTCACCA CATTGCAACA AGCGAAGCTA
GAGTTATCGC TTGAAGATGG CAAAGCGCTG CAATTAACGT TAGGCGGTAC GCCAAATATT
TGGGACGCTT ACTTGCAGAA CTGTTTAAGT GTCGTCACTG ATTCATTTGG AGGCTATGGC
TTCATGGCAG AAGTGATGGG GCGGGAAATG CTCAGTCGCA GCTTGCTAGA GCGCACGTTA
GATATGGCAT TTGCGTTCGA CCAAATCAAA GCTGATGAGC TTAACTGCAA AAAAGTGGCC
GATGTTGTTC TCGTTCTGGT ATCGACTGAG AAAGACTCTT TAGACACCGT TTTTGAAAAC
AAATACGTGT ATGTGGATTG GGGAACGCGC TTCTCATCAG AACATTCTGA ACGTCACCCT
AAGATCCCGG CTCCGTATCT GCGCACGTCA ACGGCGCGCA TTGCATTGGA CTTTATTTTA
GAGAAGGGCG GTGCCGCTTA CTTACCCATC TCTCTGGTAG AGCCCTTTAT CGCCAATGGG
CAGCTTCACA AGGTGTCTGG CGTAGAAGAT TGGTATCGCC CTATCTATTT GAGCTATCGT
AAAGCTAGCT CGTCGGTAGA CGCGATTAAG CAAGTGGAAG AAATTGTCAA AGAGATTGAT
CCACTGACGG CTTACAGTTT TCAGCAAATT GGTTCCGGCA CTTCCGACGA ATAG
|
|---|
| Protein sequence | MDVKVFRTFL ELARVRHFGR AAENLYITQA AVSARIKQLE SYFDTQLFIR DRNNIKLTSA
GERLISYAEV MVTTLQQAKL ELSLEDGKAL QLTLGGTPNI WDAYLQNCLS VVTDSFGGYG
FMAEVMGREM LSRSLLERTL DMAFAFDQIK ADELNCKKVA DVVLVLVSTE KDSLDTVFEN
KYVYVDWGTR FSSEHSERHP KIPAPYLRTS TARIALDFIL EKGGAAYLPI SLVEPFIANG
QLHKVSGVED WYRPIYLSYR KASSSVDAIK QVEEIVKEID PLTAYSFQQI GSGTSDE
|
|---|
| |