Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_000939 |
Symbol | |
ID | 8559252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | + |
Start bp | 1069838 |
End bp | 1071517 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 646408610 |
Product | pseudouridylate synthase LSU rRNA-specific |
Protein accession | YP_003288089 |
Protein GI | 262396236 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00612543 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACTCGC CTGAACATTG TTTTACACGT TTTACTGCTG ATACTTCTGA CTATGAATTA CCAACGCAGT TTACGTTTCC GTTCTACTAC ACGCCGCATC CTCTTTGCGT TATGGCCGCA AAGCAATTGC AACAGCACTT ATTAGCGCAA ACCGACTTCG AACACGATTT TGGTTTGGTT AATGAAGAAA CGGGGCGAGG CAAAATGTTT GGCGTATTGC TGGTAAAAAG CCCTCAAGGC GAGCTCGGCT TTTTAAGTGC GTTTTCTGGC AAAATTGCCG ACCAAAACTT GATTCCAAGA TTTGTCCCTC CTGTGTACGA CATGCTGACC GATGAAGGCT TCTTCCGCGC AGAAACGGAT GCCATCAACG CCGCCAATGC GGAGTACAAA ACCTGTGCTG CGAATCCGGA ATTGGCAGAT CTTAAAGCGC AAATCCAAGC CGACCGAGCC GCTTATCAGC AAGAAGAGCA AACACAGCGC CAAGTGATGA TAGACGGCCG CGCCGCACGC AAACGACAGC GCCAACAGGG CGAGCAAACA CTCAATGCCG ATGACCTCAA AATCTTGTTG GATGAGTTGG GTAAACAAAG TGTCGCCGAG AAAAACGCTC TCAAATACTT AAAGCAAGCG TGGGATGAAA AGCTTGCAAT CAAAGAAGCA CGATTGGCCG AGTTAGAGCA GCAACTTGCT CACCTTAAAG AGCAGCGCAA GACGCTCTCC AACGCTTTAC AGCACAAACT GCATAAACAA TACCGCTTCC TAAACAGCCA TGGCGAAGCA CGCGACTTGG TGGACATTTT TGCGGACACC ACAAACCCAA TACCACCAGC AGGTGCAGGG GAATGTGCTG CGCCAAAACT GCTCCAATAC GCGTTTAAAT ACGGATTCAA ACCGCTGGCG CTGGCAGAGT TTTGGTGGGG TGTTTCGCCA AAATCTGAAG TTCGCCAACA CAAAAAATTC TACCCATCGT GCAACAGCAA ATGTCAGCCG ATTTTGGGCC ATATGATGCA AGGGCTGGAT GTCGAACCTA ACCCATTGGC GGAGAATTGG GCAGAAGACA AAGAACTAGA GATAATCTAC CAAGACGACG CTATGGTCGT CGTCAACAAG CCAACGGGCT TACTTTCAGT GCCGGGTAAA ACTATCAAGG ACTCTGCTTA TACGCGCTTA CAAGCGATGT TCCCTGATGT GGAAGGGCCG TTTGTGATTC ATCGCCTCGA CATGGCGACC TCTGGCATTT TGGTGTTTGC CTTAACTAAG CGCGCGAACA AAAGCCTGCA AAAACAGTTT ATGGCTCGCG GCGTACAAAA ACGTTATATG GCACTGCTCG AAGGCGTATT GAACGAGCCG GAAGGGGAAA TTTCACTGCC AATGCGTGGT GACCCAGATG ACCGCCCACG TCAACTGGTG TGTTTTGAAC ACGGGAAACA TGCAGAAACC TACTGGCAGC TGATTGAAGT CAAAGATGGA CGCAGCAAGG TATACATGTA TCCGAAAACC GGGCGAACTC ACCAACTACG TGTACACAGT GCTCATCATA TGGGATTAAA CATGCCAATG GTTGGTGATG GTTTATACGG CGAAAAAGCG AATCGCTTAC ACCTGCATGC TGAGATGCTA GAGCTGGATC ATCCATACAG TAAAGAGCGC ATGGTGTTCA AAGCTGGGTG CGAATTCTAA
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Protein sequence | MHSPEHCFTR FTADTSDYEL PTQFTFPFYY TPHPLCVMAA KQLQQHLLAQ TDFEHDFGLV NEETGRGKMF GVLLVKSPQG ELGFLSAFSG KIADQNLIPR FVPPVYDMLT DEGFFRAETD AINAANAEYK TCAANPELAD LKAQIQADRA AYQQEEQTQR QVMIDGRAAR KRQRQQGEQT LNADDLKILL DELGKQSVAE KNALKYLKQA WDEKLAIKEA RLAELEQQLA HLKEQRKTLS NALQHKLHKQ YRFLNSHGEA RDLVDIFADT TNPIPPAGAG ECAAPKLLQY AFKYGFKPLA LAEFWWGVSP KSEVRQHKKF YPSCNSKCQP ILGHMMQGLD VEPNPLAENW AEDKELEIIY QDDAMVVVNK PTGLLSVPGK TIKDSAYTRL QAMFPDVEGP FVIHRLDMAT SGILVFALTK RANKSLQKQF MARGVQKRYM ALLEGVLNEP EGEISLPMRG DPDDRPRQLV CFEHGKHAET YWQLIEVKDG RSKVYMYPKT GRTHQLRVHS AHHMGLNMPM VGDGLYGEKA NRLHLHAEML ELDHPYSKER MVFKAGCEF
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