| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000816 |
|---|
| Symbol | |
|---|
| ID | 8559122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 938875 |
|---|
| End bp | 940947 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646408481 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_003287967 |
|---|
| Protein GI | 262396114 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGCA CTAAGAATGG GAAAATGTGG CTAACCGCCG TATTGATCAG TGCGCTGGTG
ATCTTTTTCT ACGGTGCTAG CCGAGAGGTG GCCCATCAAT GGCTGAGCGT CCAAACTCAA
CAAGAAGCAC AACAGAAACT CCTCGACTAC ATTGGTGAAG TCCGCCGAGC ATTAAAACGT
TTCTATCACC TTCCCTATCT CGTCACGAAT AACCCAGAAA CAATTGCGTT TGTGAAAGGC
AATTTAAACT ACTATGAGCC ACTTCAAGCA CAACTGACAC AGCTCGATAA AGCCGCGAAT
ACAGAGGGTT GGTTGATTCT TTCAACCTCG GGAGAAGTGT TGGTATCGAG TCTGATCGAT
GAACGGTTCA GCCGCTCTGA CCGCCGTGCG ATTGTCGAAC AAATACAACG TCAGGGAGAA
GGCGTCTCAC TGGTGAATAA AACAAAAGGT TCTAGTCCGC TTTACTACCT CTCGGCACCA
ATTTTTGATG GTTTGGAGAT AGCGGGCATC GTTGTTGTTC AAATCAACCT GAGTTTGCTA
ACGGAGCAGA CCATCACCAG CCAAGACATC ATCACGCTAC AAAATCGCCA TCAACGCTTC
TTCCTCTCCA GCAGTACAAA CTATAACGCC GACTGGTTTA ATGAACCGAA TAACCAAGTC
AAAGTCGAAA CTCAAACGCT GTATGACAAT ACGGTGATTC ATTTCTGGAC TCTCAATCAG
CAGCGCTACT TTGCACACAC AGTAAAGCTG GACGACTTAA ACTGGTTTGT CAGTTACCTT
ATTCCGACCA AACCTGTTCA GCAAACGATT AGTGTCATTG GATGGAGCAT CGCAGCGCTC
CTCCTGCTCC TTATCCTGTT GGTCATCATT GGTTTACAGC GTCGACAAAA ACATCTCAAT
CAGCAGCGTA TTCAAGCCTT ACTAGAAGAA TCGCAACGCC GACTTAAACA GATGATCAAT
AAAACACATG TTGGTTTGTT GTTGATTGAT GAACAAGGTC TATTGTTCGA CCTCAACCCA
ATGGCAAAAC GCCTTTTTTG TCTTCCTGAA AGTGTGAATC GTCATACCTT CGCCTGGGAG
TTATTTGATG CGGGTAATTC AAATTCGACC ACACTCACTT TGCTTAGAGA TCTGCCAAAG
CATAAGGAAC TAGCAGAGAT TAGCGCTGTA GAAACCATGG CGCGACGCAG TGATGGCAGC
GTATTTCCTG TACTCTTTTC ACTCACTAGC TTCCCATGGC ACGGTGAGCA GTATTTCCTT
GCTACCATAA TCGACATTAG CAAACGTAAA AAAGCGGAAC AATCGCTGCA GCTAATTAAC
CAAGAGCTCG CTCAAAGGGT GGAAGAGCGA ACTCAAGCTT TAAAACAAGC CCAAGAGCAA
TTGATTGAAT CAAGCAAAAT GGCAGCATTG GGCAGAATGT CGAGCGCGAT TACCCACGAG
TTAAACCAAC CATTGACTGG CCTGCGTACC CTTTTAACCA CCAACGAGTT GCTAGCAGAA
CGTGGACAAA CAGACATGAT GAAAGCCAAT AACAAGTTGA TTCAAAAGTT GATTGACCGC
ATGGCGAGCA TGACCAGTCA GCTAAAAACG TTTGCCTACA ATAAACCAGA AACACTGCAC
GAGATATCGC TGACAAACGC TTTAGAAGAG ACGCTACGCG TCTATCAATC TCAACTCGCA
AAGGTAGACG TTCGGGTACG CATTCCCAAC GACTTACCCA ATATCATTGG CGAAGAGCAA
CGCCTACAAC AAGTGCTCGG CAACCTAATT TCTAACGCAT TAGATGCGAT GAAAGAGACC
CAAGCTCCAC AGTTAATGAT TGCCGTTACA CCCACTACCG ATAATGTTGA GGTCGTGGTA
AGTGATAATG GGTGTGGGGT ACCTTCAGAC CAACTCGATA CCATGTTCGA ACCTTTCCAA
ACCAGTAAAA AAATTGGTGA AGGACTGGGG TTAGGACTTT CCATCACCGC CAACAATATG
CGAGATATGC AAGGGAAAGT CAGTGCGCAG CTCAACGCTG ATAAAGGCAT GTCCTTCACC
TTAATGTTTA AGCTCGCTCC TCATCGTAGC TAA
|
|---|
| Protein sequence | MQRTKNGKMW LTAVLISALV IFFYGASREV AHQWLSVQTQ QEAQQKLLDY IGEVRRALKR
FYHLPYLVTN NPETIAFVKG NLNYYEPLQA QLTQLDKAAN TEGWLILSTS GEVLVSSLID
ERFSRSDRRA IVEQIQRQGE GVSLVNKTKG SSPLYYLSAP IFDGLEIAGI VVVQINLSLL
TEQTITSQDI ITLQNRHQRF FLSSSTNYNA DWFNEPNNQV KVETQTLYDN TVIHFWTLNQ
QRYFAHTVKL DDLNWFVSYL IPTKPVQQTI SVIGWSIAAL LLLLILLVII GLQRRQKHLN
QQRIQALLEE SQRRLKQMIN KTHVGLLLID EQGLLFDLNP MAKRLFCLPE SVNRHTFAWE
LFDAGNSNST TLTLLRDLPK HKELAEISAV ETMARRSDGS VFPVLFSLTS FPWHGEQYFL
ATIIDISKRK KAEQSLQLIN QELAQRVEER TQALKQAQEQ LIESSKMAAL GRMSSAITHE
LNQPLTGLRT LLTTNELLAE RGQTDMMKAN NKLIQKLIDR MASMTSQLKT FAYNKPETLH
EISLTNALEE TLRVYQSQLA KVDVRVRIPN DLPNIIGEEQ RLQQVLGNLI SNALDAMKET
QAPQLMIAVT PTTDNVEVVV SDNGCGVPSD QLDTMFEPFQ TSKKIGEGLG LGLSITANNM
RDMQGKVSAQ LNADKGMSFT LMFKLAPHRS
|
|---|
| |