Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_000524 |
Symbol | |
ID | 8558829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | - |
Start bp | 625230 |
End bp | 627068 |
Gene Length | 1839 bp |
Protein Length | 612 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646408188 |
Product | protein-export membrane protein SecD |
Protein accession | YP_003287675 |
Protein GI | 262395822 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.26477 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA CAGCAAAGCA GCAAAAGAAC AGAAAGCTGA TGAATCACTA TTCAGCTTGG AAATATGTCG TATTAATCAC GACGGTCATT ATCTTAACGT TAAGCGCGAT TCCGACTTGG TTCGGTGAGC AACCATCGAT CCAGCTAACG TTTTCAAACC AAAACAGCAG TGAAATGTCG GTTGTTCAGT TGAATCAACT ACTGAAAACC AATCACATCT CAGCAGACAA AATCATCGAA AAAGATGGCA AAACAACCAT TGTATTCGAT GATGAAAATG CGCAAAGCAA AGCTCGTGCG TTATTAAACA ATGAGCTAAA TAAAGAAGAC AGCATTACCT TCTCATATGT GTCTGTTGCT CCAGAGTGGC TGAATGAGAT GGGTTTTAGC CCAATCAAAC TCGGTCTTGA CCTTCGCGGT GGGGTACAGT TCCTCTTGAA TGTCGACGTA AATAAAGCAT TTGAGGAGCA ACGTAATGCT TTGATCGATG AGATCAAAGC AAGCCTGCGA GATCAGCGCG TGCGTGGTGT ACAAATTCGC GCAGAAAGTG GTAACCGCAT TGCGGTAAAC AGTGAGAGTG ATACCGCCCT AGCTGAAGTA AACAAATTCT TGCGTCAAAA CTATCCTGGT TGGGTGGTGA AAAGCTCGTC TCGCGGTTTT GTTCTTGAGC CAAGTGAGCA GAATATTCAA GAGTTCCAAT CAACGACATT GCAACAAAAC TTGAAGATTA TGCGTGGTCG TATTGAAGAG CTAGGTATTA CGGAAGCATT AGTTCAGCGT CAGGGTAAAG ACAGCATTCG TATTGAGCTC CCAGGTGTAC AAGACCCAGC ACAAGCGAAA AACGTTATTG GTGCCACTGC GAGTTTGGCA TTCTATGAAG TGAAAGATGC AGGCCAAGCG CGAAGCGGCC AAGATCTTGT GCTGAAAGAT AACGATGGCC GAACTGTTGT TCTGGAGAAA CGACCAGTCC TAACGGGTGA GCACATTGTT AACGCTCGTG CAGGCGTCGA CAATATGGGT ATGTCAGAAG TTAACATCTC GCTTGACCAC GCGGGCGGTA AAAAGATGAG TGATTTCTCT GCAACGCATA TTGGCAAACC AATGGCGACG GTTTACCGCG AATACAAGAC AAACGATCGT GGCGTAACAG AGCGCAGCGA GCGCGTTATC AGCGTTGCGA CTATTCAATC TCAACTTGGT AGCCAGTTCC GTATTACCGG CGCTGGCAGC ATGGACGAAG CGCAGCAGTT AGCGCTATTA CTTCGTGCGG GGTCGCTAAC AGCCCCGGTT ACTATCGTAG AAGAGCGCAC TATTGGTGCT TCTTTGGGAG CTGAAAACAT TGAAAATGGT TTTGCGGCAC TTGCTTTAGG TATGGGGTTA ACACTGACCT TTATGGCACT TTGGTACCGC CGCTTAGGTT GGGTGGCGAA TGTGGCGCTT TGTGCCAACA TGCTTTGTTT GCTTGGCCTA ATTGCCTTGT TACCAGGTGC GGTGCTAACG CTTCCAGGTA TTGCAGGTTT GGTGTTAACC GTTGGTATGG CAGTGGACAC CAACGTTATT ATCTTCGAAC GTATTAAGGA CAAAATGCGT GAAGGCCGCA GTTTCGCTCA AGCGATTGAT CTGGGCTTTG ATAGCGCGTT CTCGACCATC CTTGATGCCA ACATTACTAC CATGATCACC GCCGTGATTT TATACGCCAT CGGTAACGGT CCAATTCAAG GCTTTGCCTT AACACTCGGA TTAGGTTTGT TAACCAGTAT GTTTACAGGC GTATTTGCCT CTCGAGCAAT GATCAATTTA ATTTGGGGCC GAGATGCCCG TCGTGATGTG AGAGTTTAA
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Protein sequence | MKKTAKQQKN RKLMNHYSAW KYVVLITTVI ILTLSAIPTW FGEQPSIQLT FSNQNSSEMS VVQLNQLLKT NHISADKIIE KDGKTTIVFD DENAQSKARA LLNNELNKED SITFSYVSVA PEWLNEMGFS PIKLGLDLRG GVQFLLNVDV NKAFEEQRNA LIDEIKASLR DQRVRGVQIR AESGNRIAVN SESDTALAEV NKFLRQNYPG WVVKSSSRGF VLEPSEQNIQ EFQSTTLQQN LKIMRGRIEE LGITEALVQR QGKDSIRIEL PGVQDPAQAK NVIGATASLA FYEVKDAGQA RSGQDLVLKD NDGRTVVLEK RPVLTGEHIV NARAGVDNMG MSEVNISLDH AGGKKMSDFS ATHIGKPMAT VYREYKTNDR GVTERSERVI SVATIQSQLG SQFRITGAGS MDEAQQLALL LRAGSLTAPV TIVEERTIGA SLGAENIENG FAALALGMGL TLTFMALWYR RLGWVANVAL CANMLCLLGL IALLPGAVLT LPGIAGLVLT VGMAVDTNVI IFERIKDKMR EGRSFAQAID LGFDSAFSTI LDANITTMIT AVILYAIGNG PIQGFALTLG LGLLTSMFTG VFASRAMINL IWGRDARRDV RV
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