Gene VEA_000524 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_000524 
Symbol 
ID8558829 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013457 
Strand
Start bp625230 
End bp627068 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content46% 
IMG OID646408188 
Productprotein-export membrane protein SecD 
Protein accessionYP_003287675 
Protein GI262395822 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.26477 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA CAGCAAAGCA GCAAAAGAAC AGAAAGCTGA TGAATCACTA TTCAGCTTGG 
AAATATGTCG TATTAATCAC GACGGTCATT ATCTTAACGT TAAGCGCGAT TCCGACTTGG
TTCGGTGAGC AACCATCGAT CCAGCTAACG TTTTCAAACC AAAACAGCAG TGAAATGTCG
GTTGTTCAGT TGAATCAACT ACTGAAAACC AATCACATCT CAGCAGACAA AATCATCGAA
AAAGATGGCA AAACAACCAT TGTATTCGAT GATGAAAATG CGCAAAGCAA AGCTCGTGCG
TTATTAAACA ATGAGCTAAA TAAAGAAGAC AGCATTACCT TCTCATATGT GTCTGTTGCT
CCAGAGTGGC TGAATGAGAT GGGTTTTAGC CCAATCAAAC TCGGTCTTGA CCTTCGCGGT
GGGGTACAGT TCCTCTTGAA TGTCGACGTA AATAAAGCAT TTGAGGAGCA ACGTAATGCT
TTGATCGATG AGATCAAAGC AAGCCTGCGA GATCAGCGCG TGCGTGGTGT ACAAATTCGC
GCAGAAAGTG GTAACCGCAT TGCGGTAAAC AGTGAGAGTG ATACCGCCCT AGCTGAAGTA
AACAAATTCT TGCGTCAAAA CTATCCTGGT TGGGTGGTGA AAAGCTCGTC TCGCGGTTTT
GTTCTTGAGC CAAGTGAGCA GAATATTCAA GAGTTCCAAT CAACGACATT GCAACAAAAC
TTGAAGATTA TGCGTGGTCG TATTGAAGAG CTAGGTATTA CGGAAGCATT AGTTCAGCGT
CAGGGTAAAG ACAGCATTCG TATTGAGCTC CCAGGTGTAC AAGACCCAGC ACAAGCGAAA
AACGTTATTG GTGCCACTGC GAGTTTGGCA TTCTATGAAG TGAAAGATGC AGGCCAAGCG
CGAAGCGGCC AAGATCTTGT GCTGAAAGAT AACGATGGCC GAACTGTTGT TCTGGAGAAA
CGACCAGTCC TAACGGGTGA GCACATTGTT AACGCTCGTG CAGGCGTCGA CAATATGGGT
ATGTCAGAAG TTAACATCTC GCTTGACCAC GCGGGCGGTA AAAAGATGAG TGATTTCTCT
GCAACGCATA TTGGCAAACC AATGGCGACG GTTTACCGCG AATACAAGAC AAACGATCGT
GGCGTAACAG AGCGCAGCGA GCGCGTTATC AGCGTTGCGA CTATTCAATC TCAACTTGGT
AGCCAGTTCC GTATTACCGG CGCTGGCAGC ATGGACGAAG CGCAGCAGTT AGCGCTATTA
CTTCGTGCGG GGTCGCTAAC AGCCCCGGTT ACTATCGTAG AAGAGCGCAC TATTGGTGCT
TCTTTGGGAG CTGAAAACAT TGAAAATGGT TTTGCGGCAC TTGCTTTAGG TATGGGGTTA
ACACTGACCT TTATGGCACT TTGGTACCGC CGCTTAGGTT GGGTGGCGAA TGTGGCGCTT
TGTGCCAACA TGCTTTGTTT GCTTGGCCTA ATTGCCTTGT TACCAGGTGC GGTGCTAACG
CTTCCAGGTA TTGCAGGTTT GGTGTTAACC GTTGGTATGG CAGTGGACAC CAACGTTATT
ATCTTCGAAC GTATTAAGGA CAAAATGCGT GAAGGCCGCA GTTTCGCTCA AGCGATTGAT
CTGGGCTTTG ATAGCGCGTT CTCGACCATC CTTGATGCCA ACATTACTAC CATGATCACC
GCCGTGATTT TATACGCCAT CGGTAACGGT CCAATTCAAG GCTTTGCCTT AACACTCGGA
TTAGGTTTGT TAACCAGTAT GTTTACAGGC GTATTTGCCT CTCGAGCAAT GATCAATTTA
ATTTGGGGCC GAGATGCCCG TCGTGATGTG AGAGTTTAA
 
Protein sequence
MKKTAKQQKN RKLMNHYSAW KYVVLITTVI ILTLSAIPTW FGEQPSIQLT FSNQNSSEMS 
VVQLNQLLKT NHISADKIIE KDGKTTIVFD DENAQSKARA LLNNELNKED SITFSYVSVA
PEWLNEMGFS PIKLGLDLRG GVQFLLNVDV NKAFEEQRNA LIDEIKASLR DQRVRGVQIR
AESGNRIAVN SESDTALAEV NKFLRQNYPG WVVKSSSRGF VLEPSEQNIQ EFQSTTLQQN
LKIMRGRIEE LGITEALVQR QGKDSIRIEL PGVQDPAQAK NVIGATASLA FYEVKDAGQA
RSGQDLVLKD NDGRTVVLEK RPVLTGEHIV NARAGVDNMG MSEVNISLDH AGGKKMSDFS
ATHIGKPMAT VYREYKTNDR GVTERSERVI SVATIQSQLG SQFRITGAGS MDEAQQLALL
LRAGSLTAPV TIVEERTIGA SLGAENIENG FAALALGMGL TLTFMALWYR RLGWVANVAL
CANMLCLLGL IALLPGAVLT LPGIAGLVLT VGMAVDTNVI IFERIKDKMR EGRSFAQAID
LGFDSAFSTI LDANITTMIT AVILYAIGNG PIQGFALTLG LGLLTSMFTG VFASRAMINL
IWGRDARRDV RV