| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000450 |
|---|
| Symbol | |
|---|
| ID | 8558756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 515267 |
|---|
| End bp | 517330 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646408116 |
|---|
| Product | ClpB protein |
|---|
| Protein accession | YP_003287603 |
|---|
| Protein GI | 262395750 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0220453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACATTC TTGCTCGTCG CCGTAAAAAC AACCCTATTG CTGTTGGTGA ACCGGGCGTT
GGTAAAACCG CAGTAGTAGA AGGTTTGGCA CTTAAGATTG TACAAGGTGA CGTACCAGAC
AACCTCAAAG GTGTTGAGCT TTACGGGCTA GATATGGGTC TTCTGCAAGC TGGTGCAAGC
GTAAAAGGTG AATTCGAAAA ACGCCTAAAC GCGGTATTGG ATGAAGTGAA AAACTCGCCA
ACCCCTATCA TTCTTTTCAT CGATGAAGCA CACACCCTTG TTGGCGGTGG TAACCAAGCG
GGCGGCAGCG ACGCGGCAAA CTTGCTAAAA CCAGCCCTAG CGCGTGGTGA AGTGAAAACC
ATCGCTGCGA CAACATGGTC GGAATACAAG AAGTACTTCG AGAAAGATCC TGCCCTTGCA
CGTCGTTTCC AATTGGTGAA ACTCGACGAA CCATCTCCTG AACAAGCAGC ATTGATCATT
CGTGGTCTGC GCCCAGCATA CGAGAAGTCA CACAACGTTT ACGTGCGTGA TGACGCCATC
ACTGCTGCGG CAGCGCTTTC TGCTCGTTAC ATCTCTGGCC GTCAACTGCC AGACAAAGCG
ATCGATGTAC TAGATACGGC GTGTGCACGA GTGAACATCA GCCTTAATGC CATTCCTGCT
TCTGTAGAGA CACTGCAACA AGAACTTGCA GCTCAACAGC GCGAGCTTGA AGCACTTGAG
CGTGATGCTC TGCAGCAAAC TGGCGACAAG CACAGCCTTG CTAACATTCC AGACCTAGAA
CTGGCAATGG AAACAACGAA AGAAGAGCTA GCAGAACAAG AAGCGCAATG GCACAAAGAA
AAAGAGCAGA TCCAAGAGAT GATTGCTCTA CGCTCTCGCT TGCATGAGCT GGTGTTTGGC
GAAACAAATG AAGAAGAGCT TGTTGCAGAA GAAGATTCAG AACAAGAGCA AGACGTTTCT
CCATATGCAG AGATGGATGA AGAAGCCGTT CGCATTGCAA TTTCGGCCTG CCAGGAACAG
CTAGACGCAA TCCGCAATGG CAACCCATTG GTTCACTTTG AAGTTGGTCC AGATGAAGTT
AGCCACGTGA TCTCGGACTG GACTGGTATT CCAATGGGTA AGATGCTTCA AGACGAAGCA
GAAACCACGC TAAAACTGAA AGAAAGCCTA ACACAGAGCA TCAAAGGCCA AGAATACGCT
ATCGATGCAC TGTCTGAAGG CATTCAAACC GCAAAAGCAG GCCTAGGCAA CCCAGACGCA
CCGACGGGCG TATTCCTACT GGTTGGCCCA AGTGGTGTGG GTAAAACCGA AACGGCTCGT
TCGATCGCTG ATCAAATGTT TGGTGGTGAG CGCTTTATGA CGACCATCAA CATGTCTGAG
TTCCAAGAGA AGCACACGGT ATCTCGCCTA ATTGGTTCAC CTCCGGGTTA CGTAGGTTAC
GGTGAAGGCG GCATGCTGAC AGAAGCGGTA CGTCAGCGTC CATACTCTGT TGTACTTCTT
GATGAAGTAG AAAAAGCCGA CCCAGAAGTG TTGAACCTAT TCTACCAAGT GTTCGACAAA
GGTACGCTGA ACGACGGCGA AGGCCGAACC ATCGATTTCA AGAACACGCT GATCATCATG
ACCAGTAACC TTGCGACGCA CGAGATTGAA TCTTTGGTTC ATCAATCCAA AGACATTGAT
GCAAACATCA TCGCAGAAGC TATCCGCCCT ACTTTGAACC AACACTTCAA ACCGGCGCTG
TTGGCACGTA TGTCGGTACT GCCATTTGTT CCGCTTTCTG ATGAAGCGAT GACAGAAATC
ATTCACCATA AGCTGAACAA AGTTTCTCAG CGTCTACAGA GCCATCACAA GTTGTCTCTG
AGCTACGAAG AAAGCTTGGT TGAGTTCGTA CTAGGCAACT GTCGCCTTGC TGAAACGGGC
GCGCGTAACA TTGACGCGGT AATCAACCGT CAGTTACTGC CTCAGCTATC GACTCAACTA
TTAGTGCATG ACAAGGATGA TTCACATACG CAAATCGAAG TGTCTGTCGA TGAGCAAGGA
ACACTAACCT ATGCGTTCAG CTAA
|
|---|
| Protein sequence | MDILARRRKN NPIAVGEPGV GKTAVVEGLA LKIVQGDVPD NLKGVELYGL DMGLLQAGAS
VKGEFEKRLN AVLDEVKNSP TPIILFIDEA HTLVGGGNQA GGSDAANLLK PALARGEVKT
IAATTWSEYK KYFEKDPALA RRFQLVKLDE PSPEQAALII RGLRPAYEKS HNVYVRDDAI
TAAAALSARY ISGRQLPDKA IDVLDTACAR VNISLNAIPA SVETLQQELA AQQRELEALE
RDALQQTGDK HSLANIPDLE LAMETTKEEL AEQEAQWHKE KEQIQEMIAL RSRLHELVFG
ETNEEELVAE EDSEQEQDVS PYAEMDEEAV RIAISACQEQ LDAIRNGNPL VHFEVGPDEV
SHVISDWTGI PMGKMLQDEA ETTLKLKESL TQSIKGQEYA IDALSEGIQT AKAGLGNPDA
PTGVFLLVGP SGVGKTETAR SIADQMFGGE RFMTTINMSE FQEKHTVSRL IGSPPGYVGY
GEGGMLTEAV RQRPYSVVLL DEVEKADPEV LNLFYQVFDK GTLNDGEGRT IDFKNTLIIM
TSNLATHEIE SLVHQSKDID ANIIAEAIRP TLNQHFKPAL LARMSVLPFV PLSDEAMTEI
IHHKLNKVSQ RLQSHHKLSL SYEESLVEFV LGNCRLAETG ARNIDAVINR QLLPQLSTQL
LVHDKDDSHT QIEVSVDEQG TLTYAFS
|
|---|
| |