| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000435 |
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| Symbol | |
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| ID | 8558741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | + |
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| Start bp | 494736 |
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| End bp | 498128 |
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| Gene Length | 3393 bp |
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| Protein Length | 1130 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646408101 |
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| Product | IcmF-related protein |
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| Protein accession | YP_003287588 |
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| Protein GI | 262395735 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.127342 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAAAC AAAAACTGTT TAGAAATCCA GTTGTGATTT CTACTATATT AACGCTTTTA
GTGGCGATAA CCATTACCGC TATTTATCTT CTTTTTCTAA AAGATGCAGA TAGACTGTAT
CTTTGGCTGA GCCTTAGTGT TATCGCCATT TTCTACGTCA CTTTTCAATT CACACTATGG
TTGAAAAAAA AGAACAGCGC TAAAGCTCAA AATTTGGAAA CTGAGGAAGA AGCTCTTTCT
ATGGTTATCC AACCTCTTCT TGCTAACTCA GGCAAGAAAC CAATTTATCT GATGCTTGGT
AATAAAGGGT CAGGGCGACG TCAATTTTTA TTTAATTCTA GTGCAATTAA ACCAATGGAT
CGCACGAGAA CCGCTAAGAA TGATTTTTTT GAATGGTACG AATCTGACAG CGCTGTATAC
ATCAAACCTG ACCAACGCTT AGTGTTTCAA GAAATATCAA GCAGTGATGC TTCTTTATGG
AATACATTCA TCGAAGAAGT GATTCGCCAC CGACCTAGAA AACCATTTTC TGGCTGTTTA
TTCTTTATCG ACTTCGAGTT CATGATCGTC TCTGAGCCAG AACAAAAAGA GTACACTATT
TCGTCGTTAT TGGAGCGCTT GAGCACTATC AACTCTAAAA CGTCGTCAGC ATTACCCATT
TATCTAATTA TGTCGAAGCT AGACAAGTTA GATGGATTTA AAGAATACAT GCACTTTAGC
TCTCTTAAGA CACGTGTAGA GTTCCTTTCT ATCCCACTGA AAGAGGCCAA AGGTGTTTTT
TCAGAATACT ATCGTGATAG TTACCGAAAT CTAGTTAAAG TGCTTGAAAG TAACGCGCTA
GATGCATCAG CTAACTCAAC AGATATCGAC GAGAAACAGG CAATTCTCGC TTTCCCTAAG
CAGTTTGAGC TATGTCAGTC TGAAGTCAGC TATGTTCTAG AGCGTCTGTG TGATGTTAAC
AACGGTGTTT ATTCGCTAGA TATCCGTGAA ATTTTCTTTA GCTCAAGTTT ACAAGGCGGT
CGTAAATACA ATTTACTAGC AAAAAGTTGT AGTAACTACT TCAACTTACC AATTATCGCC
TCTGAGCATA CCCAGTTGAC GGAAACACCG TATTTTTCTC GCTTTCTGAT TGATTCGCAA
ATATTGCCTG AAAGCGATTT TGCGGGAGAA AACAAGACGT ATCTTCGTCT AATTCAGAGA
CAAAGCCGTT TAGCCATACT CGGCTCCATT ATTCTGCTTG CTGGCGGTGG TTACTTTTTT
GCAACTACGT TAGACAGTAA TTTACATGTG ATGAATCAAC TACTAAGTAT TGATGACAAA
TCACAAGCAG AGCACGATGC AAGATTTAGT GAGCTTTTAG AAAATGCAAC CAAAGCGATA
GAACCGTCTT ATGGGGCATG GCTTAAAGGT TCTAAGGCTT TAGATGAGGA AATATTACCA
CTCAATATTA GCCGTTTGGA TCAAAGCACT CGCATTGCCT ACGAAGCGTT ACTTAAGGAA
GTCGCTCAGC AGCTAATACC TCTGATTGAG AAAGGTTACC GCCTACAATT GGCACAAAAT
CAAAACGCTT TCACGCGCGC TTTACCTCTA TTGAAGGGGT ATTTAATGCT TAACGATCCA
TCTAAGCGTG ATATCCGTTT TTTACGTCAT CAAACACTCC AAATGATGAG TGATTTGAGT
AACCGAAGTG ACGTCGTTGA TCAGGCCATG CGCTACTTAG ACGCCTACTT TCGCACACAA
TTTGCTCCAA TCGATATCAA CATGGATCTT GTTCGTGCAA CACGTCGCTC ATTACTTGCA
AATTCGAATG TCGACCTCGT GTATGCAGGC ATTTTAAACG AAGCAAGCTC TATTGATTTA
GGAACATTAG ATCTGCAACG AGCCGTCGGT TTTGAGTTTA GCAATGTATT TAATACGCCA
ATCGATAGCG AACGCTTAAT CGTCGATAAG ATCTATACCT CCACTGGTTT TAGCACCTTT
TATCGACCAC GCGTGGACTT AATGTCACAA CGAGTAATCA GCGACAACTG GGTTCTAGGT
CTATCGCAAC ATGTCATCCC TACCAACGAA GAGCAAGAAG CCTTTAAAGA AGAAGTGCGA
AAAAAATATA CTGATGACTA CATCAATAAC TGGCGTAATG CGCTGAGTGA GCTCAAAGTC
CAAAACTATG ACAACGTTGG TGACCTGACC AACGCGATAG ACTTAATCTC TGGCCCTTCT
TCACCAATGA CAACGGTATT GAAGCAGGTC TATGCCAACA CACAATTTTC ACCCGTTGGC
GAAAAAAGCG CTCTAATTTC AAAACTTGAC CCGAAACTCG CGGCAGCAGC AGATTCGGCA
TCAGATGCTG TAGAAGAAGT GGTAAAGCCT GATTACTTGC TAATGCAACG TGTTGAGCAA
GCCTTTCACT TATTAAACCA GCTTCAAGTG AGTGAGACAC CAAACTCCCC TACTCCTTGG
GATGAGACCG TTGCAGCGTT GAGCCGTGTT CGCACCTACA TGAAGGACAT CGCCGACGCG
CCAGATCCAC AAATGGCGGC GCTAGCAGCA GCACAGCATC GAATGAACAG TACTGAGGCG
GACCCATTAA TCAAGCTTAA ACAGATTGCA CAAAAATCAC CAGAACCCGT TCGCAGCTGG
TTACTAGATG TGGTTCAGCA AAGCTGGTCA GTAATGATTA CAGAGTCCGC AAAAGGCATC
CAAACTCAGT GGTACAGTGA AATTTATACC AAGTTTAAAG AGATTGGATT GGGGAAATAT
CCATTTGACC TAACAGCGAC CGAGGAAATC TCAATTGAAG ATTTCGAATT GCTATTTGCT
TCAGGTGGTT TGTTAGACAC ATTTATTCAG AAAAACTTTG CACCGTTCTA CGATACGAAC
TTGTGGACGC CAAAGCAGGT AGATGGTGAG ACGATGCCAA TCTCTCCAGC TCTGCTAGTG
CAACTACGCA ACTATAATGT CATTCGAGAT ACATTAATTA ATAAAAGCAC CAACCGAGTT
CATATTCCGT TTAGTGCAAG AGTACTCGAC CTTGACTCTA GTGCAATTAG AGCCAGTTTA
AAAATTGCGG ATACCAATAT GAGTTACTAC CACGGTCCAA GCCGAATTCG TGAAATGGCC
TGGCCACCGC AAAATGGTGA CTTCAATATT AGTATCACAC TCCAGGATGT AACAGACGAA
GGTAGACAGC ACGTTTTAAA CAAGAGTGGT CAATGGGCGA TATACAGATT GCTAGGTGAC
TCGACCTTGA CAAACACTCA TAACGGCAGC TTTGTCAGTG ACATAAAAGT GTCAGGGAGG
GACTTAAGCT TACGCATCAC TCCATTGACG CAGAAAAACC CATTCACTCT TGCTGAGCTA
TATAACTTTA CGCTCCCAGA GTCGATTAAA TAA
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| Protein sequence | MFKQKLFRNP VVISTILTLL VAITITAIYL LFLKDADRLY LWLSLSVIAI FYVTFQFTLW
LKKKNSAKAQ NLETEEEALS MVIQPLLANS GKKPIYLMLG NKGSGRRQFL FNSSAIKPMD
RTRTAKNDFF EWYESDSAVY IKPDQRLVFQ EISSSDASLW NTFIEEVIRH RPRKPFSGCL
FFIDFEFMIV SEPEQKEYTI SSLLERLSTI NSKTSSALPI YLIMSKLDKL DGFKEYMHFS
SLKTRVEFLS IPLKEAKGVF SEYYRDSYRN LVKVLESNAL DASANSTDID EKQAILAFPK
QFELCQSEVS YVLERLCDVN NGVYSLDIRE IFFSSSLQGG RKYNLLAKSC SNYFNLPIIA
SEHTQLTETP YFSRFLIDSQ ILPESDFAGE NKTYLRLIQR QSRLAILGSI ILLAGGGYFF
ATTLDSNLHV MNQLLSIDDK SQAEHDARFS ELLENATKAI EPSYGAWLKG SKALDEEILP
LNISRLDQST RIAYEALLKE VAQQLIPLIE KGYRLQLAQN QNAFTRALPL LKGYLMLNDP
SKRDIRFLRH QTLQMMSDLS NRSDVVDQAM RYLDAYFRTQ FAPIDINMDL VRATRRSLLA
NSNVDLVYAG ILNEASSIDL GTLDLQRAVG FEFSNVFNTP IDSERLIVDK IYTSTGFSTF
YRPRVDLMSQ RVISDNWVLG LSQHVIPTNE EQEAFKEEVR KKYTDDYINN WRNALSELKV
QNYDNVGDLT NAIDLISGPS SPMTTVLKQV YANTQFSPVG EKSALISKLD PKLAAAADSA
SDAVEEVVKP DYLLMQRVEQ AFHLLNQLQV SETPNSPTPW DETVAALSRV RTYMKDIADA
PDPQMAALAA AQHRMNSTEA DPLIKLKQIA QKSPEPVRSW LLDVVQQSWS VMITESAKGI
QTQWYSEIYT KFKEIGLGKY PFDLTATEEI SIEDFELLFA SGGLLDTFIQ KNFAPFYDTN
LWTPKQVDGE TMPISPALLV QLRNYNVIRD TLINKSTNRV HIPFSARVLD LDSSAIRASL
KIADTNMSYY HGPSRIREMA WPPQNGDFNI SITLQDVTDE GRQHVLNKSG QWAIYRLLGD
STLTNTHNGS FVSDIKVSGR DLSLRITPLT QKNPFTLAEL YNFTLPESIK
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