| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000343 |
|---|
| Symbol | |
|---|
| ID | 8558648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 386596 |
|---|
| End bp | 388962 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646408008 |
|---|
| Product | C-di-GMP phosphodiesterase A-related protein |
|---|
| Protein accession | YP_003287496 |
|---|
| Protein GI | 262395643 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTAA GCAATCGAGT CATCTTGCTT GTCGCGCCAG TGATCTTATT AAGCGCGCTG
GTATCAAGTT ATATTATTTA CAGCATTCAA AAAGTAACGC TCATCAAGCG AGAAGACAGC
TATATCCAAT TGCAAATGGA AAAGCTCGCA GGGCAGTTCC GACAAGCCAA CATATTCCTC
AATAGTTATG CATACACATT AAGCAAAAGT GATGTATTGC AAGACTACTT GGTGAATCAT
AGCAATCCGT ATCGTGAACG CGTGTTATTT AACCGACTCG ATGAAACCGC AGATGTGTTA
AGCCATGGCT ATACAGGCGA TGCAAGCATG GCGATTCTTG ACGGGAAACA AAACCTTCTT
TATTACACAG AAAATAAATA CTACGAATCA TCAGGTGTAG TCGACCCTAA GGTATTGGAT
TACATCTCGC GAAGCTTTAG TACGAGAGAA GCGTTTAACC ATACTGGCTT TATTTACAAT
TCCAGCGGGC AAAGTATTCT TCTGCAATAC GAACTCATCG ACAAACGAAC AGGGACACAA
CCTCTAAGTT TTGATCCGCA AAATGTCTTT TTCGTGGTGG TATCGGTATC GCTCGAAGCC
TTCAATGAGA TCAAGCACGA AATCGAGTTC GACACGCATA GCGTGATAAC TTTTGCCGAC
AAGCCTATTT ATCTAGATAT TCCTCTCGCT CAGACGATTG AACTATTGCC ACACTTTTAT
GCAGTACTCT CCCCCGCTGA ATATTTGATG TGGAATAAAG TCGATAAAGT GTGGCTAGAA
CTAGCCCTTT CCTTTGGTGT GGCGGCGTTT TGCACCATCA CCTTAATAGT TTTGGTTTTG
TATCGTTATG TATTACACCC CGTTTCTCGC CTCGATAAAC AGCTACAAGA GCTGGAAACA
AATCAACGCG GCAACATTGA AAAGCTAGAA ACAAACGATG AAATAGGGCG CTTATCCTCA
CGCTTTTTTG ATATGTATGA AGAGCTCAAC ATCATATATA AGAAGACAAA ACGCCTGGCT
GAAACGGATC ACCTAACGCA ACTCGCTAAT CGCCATCGTT TCCATGAACT TGCAACTCGT
GAACTCGTCT CCCCTTCGCA GCATTTGTGG GTCATTTATG TCGATCTCGA TAACTTTAAG
TACGTTAATG ACAAATACGG GCATGAACTG GGAGACAACT TATTAAAGGT GTTTTCATCA
CACATCAAAA ATGTCTGTCA AAAATTCTCG CACGACTACG ATAGTCCCTG TTTTGCAGCA
AGATTGTCTG GTGACGAATT TGCTATTTTA TTGAGCTCAA ATCAGGATGC ACAACGCCTA
CCCGACTTGC TGGCCTCAGA GTTGCTAAAA CCGATTAGCA ATCTCAGTCC ATCTTGGAGT
AATTCATTCC CCGTGACTGC GAGCGTAGGT ATCGCTCAGT ACCCTCAAGA CGGTACAGAC
GTCGCGAAAT TACTCTCCAG TGCCGATGCG GCAATGTATC AAGCCAAACG AGCCGGGAAA
AACCAGTACG CTTATTACTC AGCAGCTCTC AATGTTGAGT CTCAAAGACG CAGTCAGCTT
GAGCGAGCGC TCAGAAAAAG CAACGTAGAA GAAGAGTTCC ATCTCGTTTT TCAACCCTAT
ATGAATAATC GGGACAACGA GATTGAAGGA CTAGAGGTAT TATTGCGCTG GGAAGCGGAA
GGCATTGGTC CCGTACCTCC AAAAGAGTTT ATCCCAATCG CGGAACAGGC GGGCTTATTT
GATAAAATTG ATCGCTGGGT TTTCGCCAAC GCTACAGCGG AATATCACCA ATTAAGAAAT
ATTTTTGGTA AAGACATTGT CCTTTCGATC AACCTCTCTT CAGCAGAACT TAACTCCATC
GAAATGGCGA ATTATATTCA CGACCAAGCA AGCAAAAACG GCGTGAAGCC AGAATGTATT
GAGTTAGAAA TAACAGAAAC CTTTGCCGCA GAACAACAAG GTACAGCGTT ACTTGATGAG
CTGTCGAAGC GTGGCTATCG TCTCGCCATT GATGACTTTG GCTCTGGCTA TACATCGCTG
ACTCAACTTG TTCAATATCC AGTTCAAAAG ATCAAGTTTG ACCGAGAGTT CCTCGTTACA
TTGATGAAAA CCAACAACGG TCATGTGATC AAACCCATCA TCGATCTATG CCACGCTCAA
AATAAAACGG TCACCGCAGA AGGTATTGAG CACAATGTGA TGCATGAATG GTTATCGTCC
TACCGCTGTG ACTATATGCA AGGCTATTTA TTTGGTAAGC CAATGAGTAA GGAACAACTG
AATTTGTGGT GGCAATCCGC AAATGACGAT AGCCGCTTCG ATGGTTCCAT AGTTGGTTCA
ATTACTGTTC AAGGGACATC TTATTAA
|
|---|
| Protein sequence | MKLSNRVILL VAPVILLSAL VSSYIIYSIQ KVTLIKREDS YIQLQMEKLA GQFRQANIFL
NSYAYTLSKS DVLQDYLVNH SNPYRERVLF NRLDETADVL SHGYTGDASM AILDGKQNLL
YYTENKYYES SGVVDPKVLD YISRSFSTRE AFNHTGFIYN SSGQSILLQY ELIDKRTGTQ
PLSFDPQNVF FVVVSVSLEA FNEIKHEIEF DTHSVITFAD KPIYLDIPLA QTIELLPHFY
AVLSPAEYLM WNKVDKVWLE LALSFGVAAF CTITLIVLVL YRYVLHPVSR LDKQLQELET
NQRGNIEKLE TNDEIGRLSS RFFDMYEELN IIYKKTKRLA ETDHLTQLAN RHRFHELATR
ELVSPSQHLW VIYVDLDNFK YVNDKYGHEL GDNLLKVFSS HIKNVCQKFS HDYDSPCFAA
RLSGDEFAIL LSSNQDAQRL PDLLASELLK PISNLSPSWS NSFPVTASVG IAQYPQDGTD
VAKLLSSADA AMYQAKRAGK NQYAYYSAAL NVESQRRSQL ERALRKSNVE EEFHLVFQPY
MNNRDNEIEG LEVLLRWEAE GIGPVPPKEF IPIAEQAGLF DKIDRWVFAN ATAEYHQLRN
IFGKDIVLSI NLSSAELNSI EMANYIHDQA SKNGVKPECI ELEITETFAA EQQGTALLDE
LSKRGYRLAI DDFGSGYTSL TQLVQYPVQK IKFDREFLVT LMKTNNGHVI KPIIDLCHAQ
NKTVTAEGIE HNVMHEWLSS YRCDYMQGYL FGKPMSKEQL NLWWQSANDD SRFDGSIVGS
ITVQGTSY
|
|---|
| |