Gene VEA_000170 details

Gene Information

• Locus tag: VEA_000170
• ID: 8558475
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013457
• Strand: +
• Start bp: 184368
• End bp: 186278
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 646407835
• Product: GGDEF family protein
• Protein accession: YP_003287323
• Protein GI: 262395470
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.580711
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGAGAT TGCAAACATT AGATTATGAA ATCCCTGAGT CTATGCAAAA AAGTTGGCAG 
GAAATCGTCA ACTTACTGGC TCAAATAACG CACGTACCCA CCACATTAAT CATGCGTATC 
CATCCAGATC GTATTGAAGT CAACACATCC AGTGAAACTC AAGGCAACCC CTATCGTACC 
GGCGATACTG AACTGCTCGG CAACGGTTTA TATTGTGAGC ATGTCATTGA GCATAAGAGC 
GAACTCATGG TTCCTAATGC GCTCGAGGAT GAAGAATGGT GCAATAACCC TGACATAAAA 
CTAGGCATGA TATCTTATTG CGGTTTACCG TTATTCTGGC CAAACGGAGA GACGTTTGGA 
ACCATCTGCA TGCTTGATTC CAAGAAGAAT GAATACAGCG ACACTTACCG CCAATTGCTC 
GGAACTTTCA AAGACTCAAT CGAAGCGCAG CTCTCTGTCG TGTATCAGCA ACACAAACTC 
CAGCGCCTTA ATAATGAACT CAAAAATCGA GTTGAGAACC GTACTACGGA CTTAGCGCAG 
TTGAGTTACT CCCTAACAAA AGAGATTGAT CGTCGTAAGG CTGCAGAAAA ACAAGTGAGC 
TACCAAAAAA CACACGATCA GGGAACCGGA TTCTTAAATC GCGCAGCACT GGAAAGTGTT 
GTCGGAGAAA CGCTCGGAAC GTTGGATCAT AGTCAGCAAT CACTGCTCGT GATAAACATT 
GGCTTTAGTA ATGCTCGCAG TATCCAAACC CGTTATGGCT TTGAGGCCTT TGACGAGATA 
TTAAAAGAAT TTCGGTATCG CCTTGGTAAA CGAGAATCGA GTTATTTTGT TACCGGGAGG 
CCGAGCTCGA ATGACCTTGT ATTACTCATT TGGGGCAACG ATATTGATAT GAAATTGCGT 
AAGCTACTGG ATGATATCAC CAATATTGGC TTGGGAAGCT TTTATATAAA AGACACAGAG 
GTTCACCTCA ACTCTTATAT TGGTGTTGTG CAAGCCCACC AAACCAGCAA TGCCAAACAA 
CTTCTTCAAA ATGCATGCTA TGCCATGCTG CTGTGTAAAG AGTCTGGCGA AGCGTATAGT 
TATTTTTGTG AAAGTCATTC GAATGAGCTA AACAACCACA ATCAATTGGA AAGCTACTTA 
TTGCAAGCGG TAAGAAATGA CGACCTGATG CTGTACTTTC AGCCCAAAGT TCATCCCCAT 
ACTCACAAAT GGATTGGCGC AGAAGCATTG CTGCGCTGGA GACACCCAAT ACTGGGAGAC 
GTCTCTAACG AAGCATTAAT ACATATGGCT GAACAAAACG GACTTATTTT TGAAGTTGGC 
TCTTTTGTTC TTCGTACCGC GATAGACAAA GCTAAACAGT GGTCGGAGTT AATTGATAAT 
TTCAAAATTG CCGTTAACGT CTCTCCAATT CAATTACAAA ACGTGAACTT TGCGGAGCAA 
GTGCAACACC TACTCGAATC CTTTCACTTA CCAGCACATT TTCTCGAACT CGAGGTGACC 
GAGAGCGCTT TAATTGCCGA TGAAATCGTA GCACGCACAA CGCTAAACAA ATTGCACGAA 
CTAGGTGTGA CGTTGTCACT AGATGACTTC GGTACAGGGT ACGCCTCTTT CAGCTATTTG 
AAGAAATACC CATTTGATGC CATCAAGATT GATAAGAGCT TTGTCCAGCA AATGGAAAAG 
TCGGACGATG ATCGTGCGAT CATTTGCTCT ATCATACACA TAGCTAAAAA ACTGGACCTC 
CAAGTGGTTA TTGAGGGCAT TGAATCCCCC CAACAAGAGC AGTTTCTTAT TGGTGAGGGT 
TGTGATATTG GGCAAGGCTT TCTCTATGGT AAACCGATGC CTTGTAATGA ATTTGAGCAA 
AGTTTGTTTA ATCAGCGTCT TTCAGGCGGA CAATACGCCT ACTCTTCCTA A 

 

Protein sequence

MGRLQTLDYE IPESMQKSWQ EIVNLLAQIT HVPTTLIMRI HPDRIEVNTS SETQGNPYRT 
GDTELLGNGL YCEHVIEHKS ELMVPNALED EEWCNNPDIK LGMISYCGLP LFWPNGETFG 
TICMLDSKKN EYSDTYRQLL GTFKDSIEAQ LSVVYQQHKL QRLNNELKNR VENRTTDLAQ 
LSYSLTKEID RRKAAEKQVS YQKTHDQGTG FLNRAALESV VGETLGTLDH SQQSLLVINI 
GFSNARSIQT RYGFEAFDEI LKEFRYRLGK RESSYFVTGR PSSNDLVLLI WGNDIDMKLR 
KLLDDITNIG LGSFYIKDTE VHLNSYIGVV QAHQTSNAKQ LLQNACYAML LCKESGEAYS 
YFCESHSNEL NNHNQLESYL LQAVRNDDLM LYFQPKVHPH THKWIGAEAL LRWRHPILGD 
VSNEALIHMA EQNGLIFEVG SFVLRTAIDK AKQWSELIDN FKIAVNVSPI QLQNVNFAEQ 
VQHLLESFHL PAHFLELEVT ESALIADEIV ARTTLNKLHE LGVTLSLDDF GTGYASFSYL 
KKYPFDAIKI DKSFVQQMEK SDDDRAIICS IIHIAKKLDL QVVIEGIESP QQEQFLIGEG 
CDIGQGFLYG KPMPCNEFEQ SLFNQRLSGG QYAYSS