| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000105 |
|---|
| Symbol | |
|---|
| ID | 8558410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 120184 |
|---|
| End bp | 121239 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646407770 |
|---|
| Product | membrane-fusion protein |
|---|
| Protein accession | YP_003287258 |
|---|
| Protein GI | 262395405 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.860226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAG ATACCAAATG GTTAGGCGTG ATTCTGTTTG CCATACTCGC GCTTCTTTTT
CTCTATATGG CTGGTTTTTT TACAGAAAAG TTGCCGACAG AACATGACGC GAAAACCAAC
CAGATTGATG TAAATAACGC AGAGACACAT CAACTGATGT TAACCAGCGA ATCGGTTGTT
CGAGAGTTTC CGGGCGTCGT CGTTGCAGAG CAGCACGCCG ATATCGCTGC ACGGTTAACG
GCATCGGTGA TGGAGGTATT GGTGAAGGTT GGCGATAGAG TGAAGCAAGG AGACGTGTTG
GCGCGGCTAG AAAGCGATGA TCTCGACGCG CGAGTTCGTC AAAGTGAGCA GGCTTTATCC
TCTGCACAAG CGCAGCTCAA TACGGCGAGA AAGGAGTTTT CTCGTGTCAG AGCGCTTTTA
AACAAAAAAC TGATCCCTCA ATCGCAATTT GACCAAGCGG AAAGTGCGTT GCAAACCGCG
CAAGCCAACT TCAATAAAGC TCAGGCGGCG GTCTCTGAGG CGGAAACGAC CTTTGGCTAC
AGCATTATTA CTGCGCCGTT TGATGGCTTG ATCACGCAAA AGCCCATCAA CAAAGGTGAT
ACTGCGACGC CGGGGGCTTT GCTTTTATCA ATGTACAATC CAAACTCGTT GGAAATAGAG
GTGAACTTTG CTGAGTCTGT CATGCCTTAT GTGACTTACG ATAAAGAAGT GGACGTTGTT
TTTCCGTCTT ACAACCTCAA CGCGCAAGCG GCTGTAAAAG AAGTGACGCC GTCGGCAGAT
GCCAACTCGC GCAGTTATAC CGTAAAGCTT CAATTTGAGC CGCTAACGGC TATCTATCCA
GGTACATACG CCAAAGTCGC GTTGACCTTG ACCGACGATG TTGTACTTCG CGTGCCAAAA
GAGGCGGTTT ACCAAGTTGG CCAATTGGAC TACGTAAAAG TGGTGCAAGA CAGCGGTGAG
GTAGAAACTC GGCTTATTCA GCTTGGAGAG TTGGGGAGAG TGCGAACGGG GTTGAAGCAG
GGGGACGTCG TACTGCTGAA TCCAAGATCG CTTTGA
|
|---|
| Protein sequence | MKLDTKWLGV ILFAILALLF LYMAGFFTEK LPTEHDAKTN QIDVNNAETH QLMLTSESVV
REFPGVVVAE QHADIAARLT ASVMEVLVKV GDRVKQGDVL ARLESDDLDA RVRQSEQALS
SAQAQLNTAR KEFSRVRALL NKKLIPQSQF DQAESALQTA QANFNKAQAA VSEAETTFGY
SIITAPFDGL ITQKPINKGD TATPGALLLS MYNPNSLEIE VNFAESVMPY VTYDKEVDVV
FPSYNLNAQA AVKEVTPSAD ANSRSYTVKL QFEPLTAIYP GTYAKVALTL TDDVVLRVPK
EAVYQVGQLD YVKVVQDSGE VETRLIQLGE LGRVRTGLKQ GDVVLLNPRS L
|
|---|
| |