| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004522 |
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| Symbol | |
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| ID | 8558290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 3247161 |
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| End bp | 3248489 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646407651 |
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| Product | type I secretion TolC precursor |
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| Protein accession | YP_003287145 |
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| Protein GI | 262395291 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000301167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT TGCTTCCACT ATTTATCAGT GCAGCGCTAG GTAGCATGAG TACGTCTGCG
TTCGCAGACT CTTTGGCTGA AATCTACGAC TTAGCAAAAC AAAATGATCC ACAATTGCTC
AGTGTAGCAG CACAACGTGA CCAAGCTTTC GAAGCAATCA CCTCAAGCCG TAGTGCTCTA
TTACCACAAA TTAACCTAAC AGCAGGTTAC AACTTAACTC GTGGCGATAC TGAATACGAC
TCAAATCTAG TCAATGACGT ATCAAACGAT GCCAACGCTC TAACCGCTGG TGTTAGCTTT
TCACAAGCAC TTTACAACCG CGCATCTTGG ATCTCGCTAG ATACCGCTGA GAAAAGTGCT
CGTCAAGCAG ACGCAACTTA CGCTGCGACT CAACAAGCAC TAATTCTTCG TGTTTCACAA
GCGTATTTTG AAGTTCTACG CGCACAAGAC AACCTTGTTT TCGTCCGTGC AGAAAAAGCC
GCAGTGGGTC GTCAACTAGA GCAAACAAAA CAGCGTTTTG AAGTAGGTTT ATCTGCGATC
ACTGACGTAC ACGACGCGCA AGCTCAGTAC GACCAAGTAC TGGCGGATGA AGTGTTAGCA
GAAAACGCAC TGACTAACAG CTACGAGTCA TTACGTGAAA TTACCGGTCA AGAACACAAA
GATCTCAACA TCTTGGACAC TCGCCGCTTC ACTGCTAGCC CATCGACCGT GCCTGCTGAA
TCACTAATTG ACGAAGCAAA AACCAAAAAC CTGACCTTGC TATCTTCACG TATTCTTCAA
GATATCGCAC GTGACAATAT TTCACTAGCA AGTTCTGGTC ATCTACCAAC GCTGTCTCTA
GACGGTGGTT ACAACTACGG TGATACGTCT CATAGCTCTC GTGACAACAC CACAGACAAC
TTCAATATCG GTGTGAACCT TGCGGTGCCG CTATACACGG GTGGTAACGT CACCTCTCAA
ACCAAACAGG CTGAATACGC GTACGTGGCA GCAAGTGAAG ATCTTGAAGC ACAATACCGT
AGCGTAGTAA AAGATGTTCG CGCACAAAAC AACAACATTA ACGCCTCTAT CGGCGCACTA
CGTGCTTATG AGCAAGCCGT TATTTCTGCG CGCTCTGCAC TAGAAGCAAC AGAAGCAGGT
TTTGATGTGG GTACTCGTAC TATCGTTGAC GTGCTAGACG CAACTCGTCG TCTATACGAT
GCGAATAAAA ACCTATCGAA CGCTCGTTAC GACTACATCT TAAGTGTTCT TCAGCTACGC
CAAGCCGTTG GTACGCTAAG CGAACAAGAC ATCTTAGACG TTGATGCAGG TTTGAAAGCA
GCAAAATAA
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| Protein sequence | MKKLLPLFIS AALGSMSTSA FADSLAEIYD LAKQNDPQLL SVAAQRDQAF EAITSSRSAL
LPQINLTAGY NLTRGDTEYD SNLVNDVSND ANALTAGVSF SQALYNRASW ISLDTAEKSA
RQADATYAAT QQALILRVSQ AYFEVLRAQD NLVFVRAEKA AVGRQLEQTK QRFEVGLSAI
TDVHDAQAQY DQVLADEVLA ENALTNSYES LREITGQEHK DLNILDTRRF TASPSTVPAE
SLIDEAKTKN LTLLSSRILQ DIARDNISLA SSGHLPTLSL DGGYNYGDTS HSSRDNTTDN
FNIGVNLAVP LYTGGNVTSQ TKQAEYAYVA ASEDLEAQYR SVVKDVRAQN NNINASIGAL
RAYEQAVISA RSALEATEAG FDVGTRTIVD VLDATRRLYD ANKNLSNARY DYILSVLQLR
QAVGTLSEQD ILDVDAGLKA AK
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