| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004464 |
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| Symbol | |
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| ID | 8558232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 3174994 |
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| End bp | 3176742 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646407593 |
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| Product | sensory box/GGDEF family protein |
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| Protein accession | YP_003287087 |
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| Protein GI | 262395233 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.845527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCAGT TACTCAATTG GCTTTGGGAT GGTCAAGGCG GTTATGGCTA TGTCGTCTTG
TTATTAATTG CTAGCGTGTG CGCGTTAGCA CTGATCTATT TGCACTTTCA AACATCACTT
AAGCAACTCG TAACGGATTC ACCCTATCCA GTCATAGTGC TGGATACTGG CCATGCTCTG
ATCTTGTTAT CTAACCAAGC TGCGATGCAG TTATTAGGTA TTCGCTCTCT AGGCACGGGA
TATTTGTATC CCGCTTTATT CGATATTCGT GAGCTTGAGT CGTTTCTCGA CAGTGTCTCT
AGTCGTCATT TTAGCCAGCA GGTATTTGAT TGGCGCTTAT CTGAAAGCGA ATCTATCAAG
GTGGAGTTGT CAGGAAGAAA GAGTTTGCTG CGCAATCACC GTGTTTGGAT CATCTACGCG
CAGCCATATC AAGCCACTCA TCAAGAGCAG CAACAAGAGC TTGCGCAATT AACGATTGCC
CGTTCGGCAC TAGACTCACT CTCTGAGTTA ATTTGTACCC AAGATCGCCA AGGGAATTTA
TTAACGACGA ACCGAGCATT TGATCAATTT TGGGAAGGGC GAAGGGAAGA AGCCTGCGCA
TCAAAGGTTT CCATGGGTGA GGCTAGCAGA AAGAGTGAGC GCAAGTGGAC GACGGATCCA
CAAGGTCGCA GTTGCTTATT GGAAGTGAAT CAAAATTCCC TTGTGTCACC GAGTGGTGAG
CTGATCGGTA CATTATCCAT TAGTCATGAT GTGACCGAGT GGCACAAAAT GCAGCAGAAC
CTGAGAGATG AAATGGAGCG CCGTAAAGAT ACAGAAGTTG CGTTGGCGCA AAGGGATACC
ATCTTACAGA CTATTCTTGA CGCTAGCCCT GACTCTATCG GTATCTTCAA TGAGAATATG
GTCTATCAAG CGTGTAATAA ACCGTTCGTT AATGCATTAG GTATTTCAGA CGTGTCTGAT
TTGATTGGTA AGCGCCTTCA AGATGTCATT CCTGAAGAGA TGTACGCTCG CTTAGCTGCT
AGTGATTTAG ATGCATTGCG TCAGTCAGAG CCTGTCCGAT ATATAGATAA AGTCGTTAGC
AGTGATGGCA AAAGTACGTG GTTTGATGTG GTGAAATCGC CTTTTAAGGA TAAAGCTTCA
GGAACGAATG GTGTGCTGAT CATGGCGCGT GATATTTCTG AACGTTACCT TGCCGAACAA
AAGTTGGAGA GAGCCAATTT AGAGTTAGAA AAGTTGAGCT TTATGGACAG CTTAACTCAG
GTATCGAACC GACGCCGCTT CGATGAACAA CTGCAGGTAC TATGGTACCA CCATGCCCGC
GAAAAGCTGC CGCTCACTAT CATGTTGTGT GACATCGACT TTTTCAAAGA TTACAACGAC
TGTTACGGCC ATCAGCAAGG TGATGAAGCA TTGGTCAGTG TTGCTACCGT ATTCACAAAA
GTCATCAATC GCTCTTCGGA TTGTGTTGCG CGTTATGGTG GTGAGGAGTT TGGTTTTATC
CTGCCGAATA CCACAACGGA AGGCGCGAGC AATGTAGCAC AGCGTATTCA TGAACAAATT
CGACAACTCG ATATGGAGCA CGACAGCTCA GAAGCATCGG AACGTCTCAC GGTCAGTATC
GGTCTTGTCT CTTATATTCC TCAACATGGT GATGAACCGG AAATGGGTAT TGCCATGGCT
GACAGTGCGC TATACCAAGC CAAAGCGGAT GGACGTAATC GCACCTGTAT TCACCCAAGT
TCTTGCTAA
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| Protein sequence | MDQLLNWLWD GQGGYGYVVL LLIASVCALA LIYLHFQTSL KQLVTDSPYP VIVLDTGHAL
ILLSNQAAMQ LLGIRSLGTG YLYPALFDIR ELESFLDSVS SRHFSQQVFD WRLSESESIK
VELSGRKSLL RNHRVWIIYA QPYQATHQEQ QQELAQLTIA RSALDSLSEL ICTQDRQGNL
LTTNRAFDQF WEGRREEACA SKVSMGEASR KSERKWTTDP QGRSCLLEVN QNSLVSPSGE
LIGTLSISHD VTEWHKMQQN LRDEMERRKD TEVALAQRDT ILQTILDASP DSIGIFNENM
VYQACNKPFV NALGISDVSD LIGKRLQDVI PEEMYARLAA SDLDALRQSE PVRYIDKVVS
SDGKSTWFDV VKSPFKDKAS GTNGVLIMAR DISERYLAEQ KLERANLELE KLSFMDSLTQ
VSNRRRFDEQ LQVLWYHHAR EKLPLTIMLC DIDFFKDYND CYGHQQGDEA LVSVATVFTK
VINRSSDCVA RYGGEEFGFI LPNTTTEGAS NVAQRIHEQI RQLDMEHDSS EASERLTVSI
GLVSYIPQHG DEPEMGIAMA DSALYQAKAD GRNRTCIHPS SC
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