| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004413 |
|---|
| Symbol | |
|---|
| ID | 8558181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 3119025 |
|---|
| End bp | 3120695 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646407542 |
|---|
| Product | autolysin sensor kinase |
|---|
| Protein accession | YP_003287036 |
|---|
| Protein GI | 262395182 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3275] Putative regulator of cell autolysis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGG TCGTTTCCCT TTTACAACAG ATGTGTGTTT ACTTAGTTTT GGCTTACATG
CTAAGTAAAA CGCCAATCAT CTTACCTTTG CTGAGTATTT CTTCGCGCTT AAGCCACCGC
CTAATTTGTT ACGTACTTTT CTCTGGCTTT TGTATTCTCG GCACCTATTT CGGTCTGCAT
ATCAACGACG CTATTGCCAA TACTCGAGCG ATCGGCGCGG TCATGGGCGG GCTGTTTGGT
GGACCTGTTG TAGGTTTCGC CGTCGGATTT ACTGGTGGCA TCCATCGATA CTCTCTTGGT
GGCTTTACTG ACCTAGCCTG CGCAATTTCA ACCACCGCCG AGGGCGTAAT TGGTGGCTTG
CTCCACGTTT ACCTTATCAA ACGAAATAAA GGCGCATTGC TGTTTAATCC AAGCGTTGTA
TTCAGCGTCA CGTTTGTTGC AGAAGTGGTG CAAATGATTT TGCTGCTCGC CGTCGCGAAA
CCTTTTGATC AAGCCTATGA ACTGGTGTCC GCCATTGCAG CACCTATGAT CATCGCAAAC
TCATTTGGTG CGGCGTTGTT CATGAGTATC CTGCAAGACA GAAAAGCGAT CTTTGAAAAG
TTTTCTGCGA CGTTTTCGCG TCGAGCACTC ACCATTGCTG ATCGCTCAGT GGGAATTCTA
AGCAACGGCT TCAACACCGA AAACGCAGAG AAAATAGCAC GTATTATTTA CGAAGAAACA
AAAGTGGGCG CTGTCGCGAT TACCGACCAA GAAAAAATCT TAGCGTTTGT GGGCATTGGC
GATGATCACC ATAAACCGAA CACGCCGATT TCATCGCAAA GCACATTAGA CTCCATGGAG
AAAAACGACA TCATTTATCT TGATGGCGCA GAACGTCCAT ACCAATGTTC CATCGCAAAA
GACTGCAAAC TTGGCTCCGC GCTGATCATC CCACTACGTG CGGGAAAAGA GGTCATTGGT
ACCATAAAGC TGTATGAACC GAAGCGTAAA TTGTTCTCCA CGGCCAACAT GTCAATGGCG
GAAGGGATAG CTCAGCTTCT CTCTAGCCAA ATCCTGTATG GCGATTACCA ACAACAACAA
GCCTTACTCG CTCAAGCAGA AATCAAACTG CTTCACGCTC AGGTGAATCC ACACTTTTTG
TTTAATGCAC TCAATACTAT TAGTGCGATT ACTCGTCGTG ATCCTGACAA AGCGCGCGAG
CTAATCCAAA ATTTATCGCA CTTCTTCCGC AGCAATTTAA AGCAGAACAT TAATACCGTG
ACGCTAAAGG AAGAGCTTGC ACATGTGAAC TCGTACTTGA GCATCGAAAA AGCTCGTTTT
ACGGACCGCT TAGAGGTTGA AATCGATATT CAACCTGAAT TGCTGGACAT CAAATTGCCA
AGCTTTACAC TCCAGCCTTT GGTTGAGAAT GCCATTAAAC ACGGCATTTC AAACATGCTT
GAAGGTGGTA AAGTTCATAT ATACAGCGAA GCACACCCAC AAGGTCATTT GATTACCGTC
GAAGACAATG CAGGCAGTTT TGAACCGCCA AAAGAAAACC ACTCCGGGCT AGGTTTAGAA
ATTGTCGACA AACGTCTCAC TAATCAATTT GGGCGTGATG CATCGCTAAA AATTACGTGC
GAGCCACATC AATTTACTAA AATGAGCTTT ATCATTCCCC CAAAATCATA A
|
|---|
| Protein sequence | MELVVSLLQQ MCVYLVLAYM LSKTPIILPL LSISSRLSHR LICYVLFSGF CILGTYFGLH
INDAIANTRA IGAVMGGLFG GPVVGFAVGF TGGIHRYSLG GFTDLACAIS TTAEGVIGGL
LHVYLIKRNK GALLFNPSVV FSVTFVAEVV QMILLLAVAK PFDQAYELVS AIAAPMIIAN
SFGAALFMSI LQDRKAIFEK FSATFSRRAL TIADRSVGIL SNGFNTENAE KIARIIYEET
KVGAVAITDQ EKILAFVGIG DDHHKPNTPI SSQSTLDSME KNDIIYLDGA ERPYQCSIAK
DCKLGSALII PLRAGKEVIG TIKLYEPKRK LFSTANMSMA EGIAQLLSSQ ILYGDYQQQQ
ALLAQAEIKL LHAQVNPHFL FNALNTISAI TRRDPDKARE LIQNLSHFFR SNLKQNINTV
TLKEELAHVN SYLSIEKARF TDRLEVEIDI QPELLDIKLP SFTLQPLVEN AIKHGISNML
EGGKVHIYSE AHPQGHLITV EDNAGSFEPP KENHSGLGLE IVDKRLTNQF GRDASLKITC
EPHQFTKMSF IIPPKS
|
|---|
| |