| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004402 |
|---|
| Symbol | |
|---|
| ID | 8558170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 3107335 |
|---|
| End bp | 3109002 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646407531 |
|---|
| Product | ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_003287025 |
|---|
| Protein GI | 262395171 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.485845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAT ACGTATATAC CATGTCGCGG GTGAGCAAGA TTGTGCCACC TAAGCGTCAA
ATTCTTAAAG ACATCTCTCT GAGCTTCTTC CCTGGTGCGA AAATCGGTGT TTTAGGTCTG
AACGGTGCAG GTAAATCCAC ACTGCTACGT ATCATGGCAG GTATCGACAC GGATATCGAC
GGTGAAGCGC GTCCACAACC TGGTCTAAAC GTAGGCTACC TACCCCAGGA GCCAGTATTA
GACGAATCAA AAACCGTTCG TGAAGTTGTT GAAGAAGCGG TTGCTGACGT TGCTGACGCA
CTGAAACGTT TGGATGCGGT CTATGCGGCT TACGCAGAAC CAGATGCAGA CTTCGACGCA
CTTGCAAAAG AGCAAGGCGA ACTTGAAGCT CTGATTCAAG CGAAAGATGG TCACAACCTA
GAAAACGCAC TTGAGCGAGC TGCAAACGCA CTTCGTTTAC CTGAATGGGA CCAAAAAATT
GCGCACCTAT CAGGTGGTGA ACGCCGCCGT GTCGCTATTT GTCGCCTGCT ACTTTCTAAG
CCAGACATGC TGCTGCTTGA TGAGCCTACC AACCACCTAG ATGCAGAATC TGTCGCTTGG
CTAGAGCGCT TCTTAGTGGA TTACACAGGT ACTGTAGTCG CTATCACCCA CGACCGTTAC
TTCCTAGATA ACGCCGCGGG TTGGATCTTA GAGCTTGACC GTGGTGAAGG TATCCCATGG
GAAGGTAACT ACACTTCATG GTTGGAGCAA AAAGACGCTC GTCTACAACA AGAAGCATCT
CAAGAAAGCG CTCGTCAAAA AACCATCGAG AAAGAACTTG AGTGGGTACG TAAAAACCCT
AAAGGTCGTC AAGCGAAATC AAAAGCACGT ATGGCACGCT TTGAAGAACT GCAAAGCTCT
GATCACCAAA AACGTAACGA AACCAATGAA CTGTTTATCC CGCCAGGTGA GCGCCTAGGT
GATAAAGTTA TTGAAGTGAA GAACCTAACG AAGTCATTTG ACGGCCGTGT TCTCATTGAT
GACCTATCAT TCAGCATCCC TAAAGGTGCG ATTGTTGGTA TCATCGGTGC GAACGGCGCA
GGTAAATCGA CCCTATTCAA GATGTTAAGT GGTACTGAAC AACCAGATTC AGGCACAATT
GAAATGGGTG ATACAGTAAA ACTAGCATCG GTCGATCAGT TCCGTGACAG CATGGACGAT
TCTAAAACCG TATTCCAAGA GATTTCTGAA GGCGCTGATA TCATTAAGAT CAACAACTTC
GAAATCCCAG CTCGCGCATA CTGTTCACGC TTTAACTTTA AAGGCAGCGA CCAACAAAAA
ATCATTGGTG AGCTATCAGG TGGTGAGCGT AACCGTGTCC ACCTTGCGAA ACTGCTTAAA
GCGGGCGGTA ACGTGTTACT ACTCGACGAA CCGACCAACG ACCTTGACGT TGAAACACTG
CGTGCTCTAG AAGAAGCACT ACTAGAGTTC CCTGGTTGTG CAATGGTTAT CTCGCACGAC
CGTTGGTTCC TTGACCGTAT CGCGACCCAC ATCATTGACT ACCGTGACGA AGGCCAAGTT
AACTTCTACG AAGGTAACTA CACCGAGTAC ATGGACTGGT TGAAGAAAAC GTTGGGCCCT
GAAGCCGCAG AACCACACCG CATCAAATAC AAGCGTATTG CGAAGTAA
|
|---|
| Protein sequence | MAEYVYTMSR VSKIVPPKRQ ILKDISLSFF PGAKIGVLGL NGAGKSTLLR IMAGIDTDID
GEARPQPGLN VGYLPQEPVL DESKTVREVV EEAVADVADA LKRLDAVYAA YAEPDADFDA
LAKEQGELEA LIQAKDGHNL ENALERAANA LRLPEWDQKI AHLSGGERRR VAICRLLLSK
PDMLLLDEPT NHLDAESVAW LERFLVDYTG TVVAITHDRY FLDNAAGWIL ELDRGEGIPW
EGNYTSWLEQ KDARLQQEAS QESARQKTIE KELEWVRKNP KGRQAKSKAR MARFEELQSS
DHQKRNETNE LFIPPGERLG DKVIEVKNLT KSFDGRVLID DLSFSIPKGA IVGIIGANGA
GKSTLFKMLS GTEQPDSGTI EMGDTVKLAS VDQFRDSMDD SKTVFQEISE GADIIKINNF
EIPARAYCSR FNFKGSDQQK IIGELSGGER NRVHLAKLLK AGGNVLLLDE PTNDLDVETL
RALEEALLEF PGCAMVISHD RWFLDRIATH IIDYRDEGQV NFYEGNYTEY MDWLKKTLGP
EAAEPHRIKY KRIAK
|
|---|
| |