| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004401 |
|---|
| Symbol | |
|---|
| ID | 8558169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 3105024 |
|---|
| End bp | 3106961 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646407530 |
|---|
| Product | soluble lytic murein transglycosylase precursor |
|---|
| Protein accession | YP_003287024 |
|---|
| Protein GI | 262395170 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTCA ACGTATCTGA ATTGGCTAAA AACGTATGCT GCGCCGCCGC GCTGTGTGCG
ATGAGTTTGA GTGCTAATGC TGCGCTGAGC TTGGAAAAGC AGCGTGAAGT TTATGAGCAA
GCTCAAGATT TATTAGATAA AAATGACATC GACGGATACC TTTCGATCCG TCCTAAAATT
TCTGACTATC CACTGACGCC TTATGTGGAC TACCGAACGT TTATTAGACA GTTACCGGAA
AAGTCGCCAC AGCAGGTGAA CGAATTTATT TCGGAGCACG AGTCGTTTCC TTTTTCTCGT
CGTGTGCGCG CTCCATACCT CAACCATCTT TATAAGCAAA AAGATTGGAA AACCATTACT
GAGTTTCAAA AAGTCATTCC AAGTGGCGAG CGTTACCAAT GTATTTTCTA CGTGGCTCAG
TTAGAGCAAG GTAAGAAAGT TGCCGCGTTT AAAGGGGCTG AGCATATGTG GTTGCGTGGC
AGAAGTATTG CCGATGAGTG CGATCCATTA TTCGCAGCAT GGGACAAGGC AGGTGAACGT
ACTGATGAAT TGGTCCTCCA GCGTATGCTA CTGGCGTTTG ATGCTCGTAA TGGCAGTTTG
ATGAGTTACT TACTTAAACT GCCTAAATCC TCGCAGGCAA GGCAACAAGC GAAAGAAATG
AAGGAGTTGT TTGATAACCC TTCAAGCGTT GCGGAGTTCG CGAAGAAAAA AACGGCTAAT
GATTTTAATC GAGCGCAAAG CGAATATGCG TTGGAAAAGC TAGCTCGCAT GAATACCAGT
CAAGCGCAGA GTGTATATGA TGCCGTTATT AAAGGGCAGA AGTTTTCTCC AGAAAAGGCG
CAAGCCCTGG CTGACTATAT CGCATTTCGA TTGACCCGTA CGGAGTCTGA GTCACTAGCG
AAGTGGCGTG ATGATAAAAC GAAAACCAGC CAGTACTTAC CGCTCATTGA AACTCGCATT
CGCTTAGCGA TTCAGAACGC GGATTGGAAG GGCGTACAAG AGTGGATTGC CGTTCTCAAT
AAAGAAGAGC AAGCGTCGCT TCGCTGGCAA TACTGGCTTG GACGAAGTGA AATTGCGTTA
GGTGATGACA TCGCAGGGAA ACAGCGTTTA GCGACTTTGG TCGGGCAGCG AAACTTTTAT
AGTGTGGCAG CCGCTAATGC GATTGGACAA TCAATCAAAT ACCCTACGCA TACGGTTAAG
TTTGATAAGC GAGTGGTTCA ACCCTATCAA GACTCGTTAG TTCGTATTGA AGAGTTGATC
GCGACGGATA AAATTGCAGC AGCGAAAAGT GAATGGGCAC ATTTATTGCG CCGCGTAGGG
AAAGATGAAA AGGCGATGCT GGCGGCTTAT GCGTCTTCTA AGCGTTGGCA TAACCTAACG
GTGACCGCGA GTATTCAAGC GCAGATGTGG GATAATATCG AACTGAGGTT CCCGATTGCG
CATCGCTGGT GGTTTAACTT TTATGCAAAA AAACACAACA TAGATCCCGT GACGATGATG
TCCCTAGCTC GACAGGAAAG TGCGTTGGAT GTCGAAGCCC GTTCTCCAGT TGGTGCTCGT
GGTCTTATGC AGATCATGCC CGCTACAGCA AAGTATACAG CACGTAAATA TAAGTTGAGT
TATCAAGGTA CGCAGGATCT CTACAATGTG GGCAAAAATA TCGAAATTGG TAGCCATTAT
TTGCAAGGCT TATTAGAGGA TTACGATAAT AATCGTATTT TTGCTCTTGC TGCTTATAAT
GCAGGTCCTA ACAGAGTAAA AACGTGGCGA GAGCGTACCC AAGGAAAAGT GGATGCTTAT
GCCTTTATTG AGGCAATTCC ATTTAGAGAG ACACGCGGTT ATGTACAAAA CATCCTGATG
TTTGAAACAT ATTACCGTGA TCTTTTGGGT ATCGATGGCG CGTTCTTGAA TCAACATGAG
ATCAATACCA AGTATTGA
|
|---|
| Protein sequence | MRFNVSELAK NVCCAAALCA MSLSANAALS LEKQREVYEQ AQDLLDKNDI DGYLSIRPKI
SDYPLTPYVD YRTFIRQLPE KSPQQVNEFI SEHESFPFSR RVRAPYLNHL YKQKDWKTIT
EFQKVIPSGE RYQCIFYVAQ LEQGKKVAAF KGAEHMWLRG RSIADECDPL FAAWDKAGER
TDELVLQRML LAFDARNGSL MSYLLKLPKS SQARQQAKEM KELFDNPSSV AEFAKKKTAN
DFNRAQSEYA LEKLARMNTS QAQSVYDAVI KGQKFSPEKA QALADYIAFR LTRTESESLA
KWRDDKTKTS QYLPLIETRI RLAIQNADWK GVQEWIAVLN KEEQASLRWQ YWLGRSEIAL
GDDIAGKQRL ATLVGQRNFY SVAAANAIGQ SIKYPTHTVK FDKRVVQPYQ DSLVRIEELI
ATDKIAAAKS EWAHLLRRVG KDEKAMLAAY ASSKRWHNLT VTASIQAQMW DNIELRFPIA
HRWWFNFYAK KHNIDPVTMM SLARQESALD VEARSPVGAR GLMQIMPATA KYTARKYKLS
YQGTQDLYNV GKNIEIGSHY LQGLLEDYDN NRIFALAAYN AGPNRVKTWR ERTQGKVDAY
AFIEAIPFRE TRGYVQNILM FETYYRDLLG IDGAFLNQHE INTKY
|
|---|
| |