Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_004394 |
Symbol | |
ID | 8558162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 3098491 |
End bp | 3099468 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 646407523 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_003287017 |
Protein GI | 262395163 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.530574 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTCAGC AGATTGTATT AACAAATACC GTAAAAGATA GCCAGTTAGG TCAACGTTTA GACCAAGCTA TCGCCGAATT ATTCGCGGAC TTCTCTCGCT CGCGCCTGAA AGAGTGGCTG CTTGATGGGA AAGTTCAAGT TAATGGTGAA GTTGTCACCA AACCTCGCAC CAAAGTAATG GGTGGCGAGG AAATTACATT GCAAGCCGAG TTAGAAGATG AAGAACGCTG GGAAGCGCAA GATATCCCGC TAGATATCGT TTTTGAAGAT GACGATATTA TCGTTATCAA TAAGCCTCGT GACTTTGTGG TTCACCCAGG TGCCGGTACG CCAGATGGTA CGGTGCTTAA TGCGTTGTTG CATCATTACC CTGATATCGC AGAAGTGCCT CGTGCTGGCA TTGTGCACCG CCTGGATAAA GACACAACGG GTCTGATGGT GGTGGCGAAA ACCGTTCCTG CACAAACTCG TCTGGTTCGC GCACTGCAAA AACGTAATAT TACTCGAGAG TACGAAGCGA TCGCTATTGG TCGTATGACA GCGGGCGGTA AAGTGGACCA ACCTATTGGT CGTCATTCTA CCAAGCGCAC GCTTATGGCG GTAGCACCAA TGGGTAAACC AGCGGTAACA CATTACCGTG TCGCTGAACG TTTCCGCGAA CACACACGTA TCCGTCTGCG TCTTGAAACG GGTCGTACGC ACCAGATCCG TGTGCACATG TCTTACCTTC AGCATCCGCT GCTCGGTGAT ATTGCATATG GTGGACGTGC TCGCATCCCG ACAGGTGCTT CTGAAGAGCT AACGGCAATG ATCCGTGGCT TCGATCGCCA AGCATTGCAC GCCGTAATGC TACGCTTTGA ACATCCAATT ACGGGAGAAG TACTTGAGTT CCATGCCCCT GTGCCTGATG ACATGGTGGC GATGACTGAA GCGCTTCGTC AAGATACGGA AGAGCACGGT TTACCGGAAG AGTTCTAA
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Protein sequence | MAQQIVLTNT VKDSQLGQRL DQAIAELFAD FSRSRLKEWL LDGKVQVNGE VVTKPRTKVM GGEEITLQAE LEDEERWEAQ DIPLDIVFED DDIIVINKPR DFVVHPGAGT PDGTVLNALL HHYPDIAEVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVR ALQKRNITRE YEAIAIGRMT AGGKVDQPIG RHSTKRTLMA VAPMGKPAVT HYRVAERFRE HTRIRLRLET GRTHQIRVHM SYLQHPLLGD IAYGGRARIP TGASEELTAM IRGFDRQALH AVMLRFEHPI TGEVLEFHAP VPDDMVAMTE ALRQDTEEHG LPEEF
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