| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004365 |
|---|
| Symbol | |
|---|
| ID | 8558126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 3057318 |
|---|
| End bp | 3059141 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646407487 |
|---|
| Product | protein-export membrane protein SecD |
|---|
| Protein accession | YP_003286988 |
|---|
| Protein GI | 262395134 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.59973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTATTTT TTGCCATCAT CACCGCTGCG TTATACGCAC TTCCAAATAT CTACGGTGAA
GATCCGGCTA TTCAAGTTAC AGGGGCGCGT GGCGCCTCTG TAGATATGTC AACGCTGGAT
GCTGTCACTA CTGCTCTTGA TAAAGAGCAA CTCTCTCATA AATCCATTGC TCTCGAAAAT
GGATCAATTC TTGTTCGTTT TAACGACACT GACACACAAA TCAGTGCTCG TGATGTCATC
AGCGAAGCGC TTGGCAAAGA CACAATTGTT GCACTTAACC TTGCTCCTTC TACACCCGAT
TGGCTAGAAG CGATTGGCGC GTCACCATTA AAGCTGGGTC TTGACCTTCG TGGTGGTGTC
CACTTCTTAA TGGAAGTAGA CATGGACGCG GCGATGGAAA AGCTCGTTGG TCAGCAAGAA
GAAGCTTTCC GTAGCGAACT TCGTGAGGCA AAAATTCGTT ATCGTGCTAT TCGCCCTTCT
GGCAAAGAAG CGGTAGAGGT TCTGCTACGT AACGAAGAGC AATTAGCAGA AGCGAAAGCA
ATGCTAGAAA AGAATCACCC GGACATGCTC TTTGTCGAAT CTGATTCAAA TGGCCGTTAC
GCTCTTACTG CGACCTTTAC CGAGCAACGT TTACAAGAGA TCCGTAACTA CGCTGTTGAG
CAAAACATTA CGATTTTACG TAACCGTGTA AACGAGCTAG GTGTTGCAGA GCCTCTCGTT
CAACGTCAAG GTGCAAGTCG AATTGTTGTT GAGCTTCCTG GTGTTCAAGA TACTGCTCGT
GCAAAAGAGA TTCTAGGTGC GACTGCAACG CTAGAATTCC GTGAAGTTGA CGATAAAGCT
GACCTATCAG CGGCGGCAAA TGGTCGTGCG CCAGCAGGCA GTGAAATCAA AATGGACCGA
GACGGTCGTC CGGTTGTGCT TAAGAAGCGT GTTATTCTTG GTGGTCAAAG CATTACGGAT
GCAAGCTCAA GTGTCGATGA ATACGGTCGT CCACAAGTTA ACATCTCGCT AGACAGCGAA
GGTGGTAACA AGATGTCAGC GTTCTCTAAG AAGAACATCG GTAAGCTAAT GGCTACCGTG
TTTGCTGAGT ACAAAGACAG TGGTCGTCGT ACGCCAGAAG GCAAAGTCAT CCTAGATAAG
CATGAAGAAG TCATCAACCA AGCGACGATT CAATCGGCTC TTGGACGTAA CTTCCGTATC
ACGGGTATAG ACTCCGCAGC TGAAGCGCAC AACCTTGCAC TTCTATTACG TGCTGGTGCA
CTGATCGCAC CTATCTCTAT CGTTGAAGAG CGTACTATTG GTCCATCAAT GGGCCAGCAA
AACATCGATA TGGGTATCCA AGCGTGTATC TGGGGTATGG TTGCGGTAAT GCTGTTTACA
CTGCTTTACT ACCGTGGCTT TGGCTTGATT GCCAACATCG CTCTAATGGC TAACTTAGTG
TTGATCATTG GTGTGATGTC GATGATTCCA GGCGCTACCA TGACGCTTCC GGGGATTGCC
GGTATCGTGT TAACAGTCGG TATGGCGGTT GATGCGAACG TACTGATCTT CGAGCGTATC
CGTGAAGAGC TTCGCGATGG GCGTAGTCCA CAACAAGCGA TTCACCAAGG TTACGCGAAT
GCATTCAGTA CGATTGCCGA TGCGAACATC ACGACACTGA TTACTGCAAT TATCCTATTT
GCAGTCGGTA CTGGTGCAGT GAAAGGTTTC GCGGTTACTC TATCTATCGG TATCTTAACT
TCAATGTTCA CCGCCATTAT TGGTACACGT TGTATCGTGA ACCTGATTTA CGGTGGCAAA
CGCGTTGATA AATTGTCGAT CTAA
|
|---|
| Protein sequence | MVFFAIITAA LYALPNIYGE DPAIQVTGAR GASVDMSTLD AVTTALDKEQ LSHKSIALEN
GSILVRFNDT DTQISARDVI SEALGKDTIV ALNLAPSTPD WLEAIGASPL KLGLDLRGGV
HFLMEVDMDA AMEKLVGQQE EAFRSELREA KIRYRAIRPS GKEAVEVLLR NEEQLAEAKA
MLEKNHPDML FVESDSNGRY ALTATFTEQR LQEIRNYAVE QNITILRNRV NELGVAEPLV
QRQGASRIVV ELPGVQDTAR AKEILGATAT LEFREVDDKA DLSAAANGRA PAGSEIKMDR
DGRPVVLKKR VILGGQSITD ASSSVDEYGR PQVNISLDSE GGNKMSAFSK KNIGKLMATV
FAEYKDSGRR TPEGKVILDK HEEVINQATI QSALGRNFRI TGIDSAAEAH NLALLLRAGA
LIAPISIVEE RTIGPSMGQQ NIDMGIQACI WGMVAVMLFT LLYYRGFGLI ANIALMANLV
LIIGVMSMIP GATMTLPGIA GIVLTVGMAV DANVLIFERI REELRDGRSP QQAIHQGYAN
AFSTIADANI TTLITAIILF AVGTGAVKGF AVTLSIGILT SMFTAIIGTR CIVNLIYGGK
RVDKLSI
|
|---|
| |