Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_004365 |
Symbol | |
ID | 8558126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 3057318 |
End bp | 3059141 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646407487 |
Product | protein-export membrane protein SecD |
Protein accession | YP_003286988 |
Protein GI | 262395134 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.59973 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTATTTT TTGCCATCAT CACCGCTGCG TTATACGCAC TTCCAAATAT CTACGGTGAA GATCCGGCTA TTCAAGTTAC AGGGGCGCGT GGCGCCTCTG TAGATATGTC AACGCTGGAT GCTGTCACTA CTGCTCTTGA TAAAGAGCAA CTCTCTCATA AATCCATTGC TCTCGAAAAT GGATCAATTC TTGTTCGTTT TAACGACACT GACACACAAA TCAGTGCTCG TGATGTCATC AGCGAAGCGC TTGGCAAAGA CACAATTGTT GCACTTAACC TTGCTCCTTC TACACCCGAT TGGCTAGAAG CGATTGGCGC GTCACCATTA AAGCTGGGTC TTGACCTTCG TGGTGGTGTC CACTTCTTAA TGGAAGTAGA CATGGACGCG GCGATGGAAA AGCTCGTTGG TCAGCAAGAA GAAGCTTTCC GTAGCGAACT TCGTGAGGCA AAAATTCGTT ATCGTGCTAT TCGCCCTTCT GGCAAAGAAG CGGTAGAGGT TCTGCTACGT AACGAAGAGC AATTAGCAGA AGCGAAAGCA ATGCTAGAAA AGAATCACCC GGACATGCTC TTTGTCGAAT CTGATTCAAA TGGCCGTTAC GCTCTTACTG CGACCTTTAC CGAGCAACGT TTACAAGAGA TCCGTAACTA CGCTGTTGAG CAAAACATTA CGATTTTACG TAACCGTGTA AACGAGCTAG GTGTTGCAGA GCCTCTCGTT CAACGTCAAG GTGCAAGTCG AATTGTTGTT GAGCTTCCTG GTGTTCAAGA TACTGCTCGT GCAAAAGAGA TTCTAGGTGC GACTGCAACG CTAGAATTCC GTGAAGTTGA CGATAAAGCT GACCTATCAG CGGCGGCAAA TGGTCGTGCG CCAGCAGGCA GTGAAATCAA AATGGACCGA GACGGTCGTC CGGTTGTGCT TAAGAAGCGT GTTATTCTTG GTGGTCAAAG CATTACGGAT GCAAGCTCAA GTGTCGATGA ATACGGTCGT CCACAAGTTA ACATCTCGCT AGACAGCGAA GGTGGTAACA AGATGTCAGC GTTCTCTAAG AAGAACATCG GTAAGCTAAT GGCTACCGTG TTTGCTGAGT ACAAAGACAG TGGTCGTCGT ACGCCAGAAG GCAAAGTCAT CCTAGATAAG CATGAAGAAG TCATCAACCA AGCGACGATT CAATCGGCTC TTGGACGTAA CTTCCGTATC ACGGGTATAG ACTCCGCAGC TGAAGCGCAC AACCTTGCAC TTCTATTACG TGCTGGTGCA CTGATCGCAC CTATCTCTAT CGTTGAAGAG CGTACTATTG GTCCATCAAT GGGCCAGCAA AACATCGATA TGGGTATCCA AGCGTGTATC TGGGGTATGG TTGCGGTAAT GCTGTTTACA CTGCTTTACT ACCGTGGCTT TGGCTTGATT GCCAACATCG CTCTAATGGC TAACTTAGTG TTGATCATTG GTGTGATGTC GATGATTCCA GGCGCTACCA TGACGCTTCC GGGGATTGCC GGTATCGTGT TAACAGTCGG TATGGCGGTT GATGCGAACG TACTGATCTT CGAGCGTATC CGTGAAGAGC TTCGCGATGG GCGTAGTCCA CAACAAGCGA TTCACCAAGG TTACGCGAAT GCATTCAGTA CGATTGCCGA TGCGAACATC ACGACACTGA TTACTGCAAT TATCCTATTT GCAGTCGGTA CTGGTGCAGT GAAAGGTTTC GCGGTTACTC TATCTATCGG TATCTTAACT TCAATGTTCA CCGCCATTAT TGGTACACGT TGTATCGTGA ACCTGATTTA CGGTGGCAAA CGCGTTGATA AATTGTCGAT CTAA
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Protein sequence | MVFFAIITAA LYALPNIYGE DPAIQVTGAR GASVDMSTLD AVTTALDKEQ LSHKSIALEN GSILVRFNDT DTQISARDVI SEALGKDTIV ALNLAPSTPD WLEAIGASPL KLGLDLRGGV HFLMEVDMDA AMEKLVGQQE EAFRSELREA KIRYRAIRPS GKEAVEVLLR NEEQLAEAKA MLEKNHPDML FVESDSNGRY ALTATFTEQR LQEIRNYAVE QNITILRNRV NELGVAEPLV QRQGASRIVV ELPGVQDTAR AKEILGATAT LEFREVDDKA DLSAAANGRA PAGSEIKMDR DGRPVVLKKR VILGGQSITD ASSSVDEYGR PQVNISLDSE GGNKMSAFSK KNIGKLMATV FAEYKDSGRR TPEGKVILDK HEEVINQATI QSALGRNFRI TGIDSAAEAH NLALLLRAGA LIAPISIVEE RTIGPSMGQQ NIDMGIQACI WGMVAVMLFT LLYYRGFGLI ANIALMANLV LIIGVMSMIP GATMTLPGIA GIVLTVGMAV DANVLIFERI REELRDGRSP QQAIHQGYAN AFSTIADANI TTLITAIILF AVGTGAVKGF AVTLSIGILT SMFTAIIGTR CIVNLIYGGK RVDKLSI
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