Gene VEA_004349 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_004349 
Symbol 
ID8558110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand- 
Start bp3042647 
End bp3043765 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content46% 
IMG OID646407471 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_003286972 
Protein GI262395118 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACACG AATCTCCAAT TATTCGTCGT AAATCGACGC GTATTTATGT GGGTGATGTG 
CCAATTGGTG ATGGTGCGCC AATTGCCGTA CAGTCAATGA CTAACACTCG CACGACTGAC 
GTAGAAGCGA CAGTCGCTCA AATCCGAGCA CTAGAAAAAG TCGGTGCAGA TATCGTTCGA 
GTTTCTGTAC CTACCATGGA CGCAGCAGAA GCTTTCAAAC TGATTAAACA GCAAGTTTCT 
GTACCATTAG TGGCTGATAT TCATTTCGAC TATCGTATCG CGCTGAAAGT GGCGGAGTAC 
GGTGTTGACT GTTTACGCAT CAACCCAGGT AACATCGGCA ATGAAGAGCG CATTCGCGCT 
GTTGTTGACT GTGCTCGCGA TAAAAACATC CCAATCCGTA TTGGTGTCAA CGGTGGATCT 
TTGGAAAAAG ATTTACAGAT GAAATACGGC GAACCAACGC CAGAAGCTTT AGTTGAATCG 
GCGATGCGTC ACGTAGATCA TCTCGATCGT CTTAACTTTG ACCAATTTAA AGTTAGCGTG 
AAAGCTTCAG ACGTCTTCCT TGCGGTGGAT TCATACCGTC TGCTAGCGAA GAAAATCGAT 
CAGCCTCTTC ACTTGGGTAT TACAGAAGCG GGTGGTGCTC GTGCTGGTGC TGTTAAGTCA 
TCTGTTGGCT TAGGTATGCT GTTATCTGAA GGGATCGGTG ATACGCTGCG TATCTCTTTG 
GCTGCCGATC CAGTTGAAGA AATCAAAGTC GGTTTCGACA TTCTTAAATC TCTGCGTATT 
CGCTCTCGAG GCATCAACTT TATTGCTTGC CCAAGTTGCT CGCGCCAAGA ATTTGATGTG 
ATTGGCACGG TGAACGCACT TGAGCAGCGT TTAGAAGACA TCATCACGCC AATGGATGTG 
TCTATCATCG GTTGTGTGGT AAACGGCCCT GGTGAAGCAG AAGTTTCTCA CTTAGGTCTA 
GCAGGCAGTA ACAAGAAGAG CGCATTCTAC GAAGATGGCA AACGCCAGAA AGAACGCTTT 
GATAACGATG ACCTTGTGAA TCAGCTAGAA GCTAAGATCC GTGCGAAAGC CGCCATGATG 
AATGGCGAAA ATCGCATCGA AGTTAAAGTA CAAGATTAA
 
Protein sequence
MQHESPIIRR KSTRIYVGDV PIGDGAPIAV QSMTNTRTTD VEATVAQIRA LEKVGADIVR 
VSVPTMDAAE AFKLIKQQVS VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRA 
VVDCARDKNI PIRIGVNGGS LEKDLQMKYG EPTPEALVES AMRHVDHLDR LNFDQFKVSV 
KASDVFLAVD SYRLLAKKID QPLHLGITEA GGARAGAVKS SVGLGMLLSE GIGDTLRISL 
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV IGTVNALEQR LEDIITPMDV 
SIIGCVVNGP GEAEVSHLGL AGSNKKSAFY EDGKRQKERF DNDDLVNQLE AKIRAKAAMM 
NGENRIEVKV QD