| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004339 |
|---|
| Symbol | |
|---|
| ID | 8558100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 3030104 |
|---|
| End bp | 3031300 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646407461 |
|---|
| Product | integrase |
|---|
| Protein accession | YP_003286962 |
|---|
| Protein GI | 262395108 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACTG ATACCAAGTT ACGCAATCTC AAACCCAAAG ATAAACTTTA CAAAGTCAAT
GACCGTGATG GCCTCTATGT TGCCGTCACC ACTGCAGGAT CTATCTCCTT TCGCTACAAC
TACTCGATCA ATGGCAGGCA AGAAACCATT ACCTTTGGCC GCTACGGAGT AGGAGGCATC
ACGTTAGCTG AAGCTCGTGA GCGCCTCAAT GAAGCGAAGC GAATGGTTAC TGTTGGAAAG
TCACCGGCCA AAGAGAAAGC CCGTGCTAAG GCGAGAATGA AAGATGCTGA AACCTTTGGT
GCCTGGGCTC AGAAATGGCT GCGTGGCTAT CAGATGGCAG ACTCTACCCG GGATATGCGT
CGCTCTGTCT ATGTCCGAGA GTTAGAGGGC AAATTTGGCA ATCAGAAGCT CACAGAAATC
ACCCATGAAG ATCTGCGAGC ACTGACTGAC GCGATAGTAG AGCGTGGCGC GCCCGCAACG
GCTGTACATA CGCGTGACAT TGTACTCCAG GTGTATCGAT GGGCGATTGA GAGAGGGCAG
AAAGTTGAGA ACCCAGCAGA CTTGGTGAGG CCCGCAAGTA TCGCTCGATT TGAACCAAGA
GACCGAACAT TAACACCGGC TGAGATCGGT TTGATGTACC GCTACATGGA AAAGGTAGGT
ACAACCCCTT CGATTCGTGC TGCGGTAAAG TTGCTGTTGT TGACTATGGT GCGCAAAAGC
GAGTTAACCA ATGCAACCTG GAATGAAATT AACTTTAGTG AAGCGTTGTG GACGATCCCC
AAGGAGAGAA TGAAACGACG TAACCCGCAC CTGGTATTTT TGTCACGCCA GGCTATGGAC
ATTCTCATCG CCTTAAAGAC ATTTGCCGGT GGGTCTGATT ACATTCTTCC TTCCCGTTAT
GACTCAGATG CCCCAATGAG CAGCGCAACG ATGAACCGAG TTATGGATTT GACATATAAA
GCCGCGCAAA AGGAAGGTCA GTCACTAAGT AAGTTTGGGC CGCATGACCT ACGTAGAACA
GCGAGTACAC TGCTGCATGA AGCTGGATAC AACACTGATT GGATAGAAAA ATGCCTGGCG
CACGAACAGA AAGGGGTTAG AGCCGTTTAC AACAAAGCTG AGTATCGAGA ACAAAGAGCA
TCAATGCTAC AGGACTGGGC TGATATGATA GATGAGTGGA CCGGTCAAAA ATTTTAA
|
|---|
| Protein sequence | MLTDTKLRNL KPKDKLYKVN DRDGLYVAVT TAGSISFRYN YSINGRQETI TFGRYGVGGI
TLAEARERLN EAKRMVTVGK SPAKEKARAK ARMKDAETFG AWAQKWLRGY QMADSTRDMR
RSVYVRELEG KFGNQKLTEI THEDLRALTD AIVERGAPAT AVHTRDIVLQ VYRWAIERGQ
KVENPADLVR PASIARFEPR DRTLTPAEIG LMYRYMEKVG TTPSIRAAVK LLLLTMVRKS
ELTNATWNEI NFSEALWTIP KERMKRRNPH LVFLSRQAMD ILIALKTFAG GSDYILPSRY
DSDAPMSSAT MNRVMDLTYK AAQKEGQSLS KFGPHDLRRT ASTLLHEAGY NTDWIEKCLA
HEQKGVRAVY NKAEYREQRA SMLQDWADMI DEWTGQKF
|
|---|
| |