Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_004339 |
Symbol | |
ID | 8558100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 3030104 |
End bp | 3031300 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 646407461 |
Product | integrase |
Protein accession | YP_003286962 |
Protein GI | 262395108 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTGACTG ATACCAAGTT ACGCAATCTC AAACCCAAAG ATAAACTTTA CAAAGTCAAT GACCGTGATG GCCTCTATGT TGCCGTCACC ACTGCAGGAT CTATCTCCTT TCGCTACAAC TACTCGATCA ATGGCAGGCA AGAAACCATT ACCTTTGGCC GCTACGGAGT AGGAGGCATC ACGTTAGCTG AAGCTCGTGA GCGCCTCAAT GAAGCGAAGC GAATGGTTAC TGTTGGAAAG TCACCGGCCA AAGAGAAAGC CCGTGCTAAG GCGAGAATGA AAGATGCTGA AACCTTTGGT GCCTGGGCTC AGAAATGGCT GCGTGGCTAT CAGATGGCAG ACTCTACCCG GGATATGCGT CGCTCTGTCT ATGTCCGAGA GTTAGAGGGC AAATTTGGCA ATCAGAAGCT CACAGAAATC ACCCATGAAG ATCTGCGAGC ACTGACTGAC GCGATAGTAG AGCGTGGCGC GCCCGCAACG GCTGTACATA CGCGTGACAT TGTACTCCAG GTGTATCGAT GGGCGATTGA GAGAGGGCAG AAAGTTGAGA ACCCAGCAGA CTTGGTGAGG CCCGCAAGTA TCGCTCGATT TGAACCAAGA GACCGAACAT TAACACCGGC TGAGATCGGT TTGATGTACC GCTACATGGA AAAGGTAGGT ACAACCCCTT CGATTCGTGC TGCGGTAAAG TTGCTGTTGT TGACTATGGT GCGCAAAAGC GAGTTAACCA ATGCAACCTG GAATGAAATT AACTTTAGTG AAGCGTTGTG GACGATCCCC AAGGAGAGAA TGAAACGACG TAACCCGCAC CTGGTATTTT TGTCACGCCA GGCTATGGAC ATTCTCATCG CCTTAAAGAC ATTTGCCGGT GGGTCTGATT ACATTCTTCC TTCCCGTTAT GACTCAGATG CCCCAATGAG CAGCGCAACG ATGAACCGAG TTATGGATTT GACATATAAA GCCGCGCAAA AGGAAGGTCA GTCACTAAGT AAGTTTGGGC CGCATGACCT ACGTAGAACA GCGAGTACAC TGCTGCATGA AGCTGGATAC AACACTGATT GGATAGAAAA ATGCCTGGCG CACGAACAGA AAGGGGTTAG AGCCGTTTAC AACAAAGCTG AGTATCGAGA ACAAAGAGCA TCAATGCTAC AGGACTGGGC TGATATGATA GATGAGTGGA CCGGTCAAAA ATTTTAA
|
Protein sequence | MLTDTKLRNL KPKDKLYKVN DRDGLYVAVT TAGSISFRYN YSINGRQETI TFGRYGVGGI TLAEARERLN EAKRMVTVGK SPAKEKARAK ARMKDAETFG AWAQKWLRGY QMADSTRDMR RSVYVRELEG KFGNQKLTEI THEDLRALTD AIVERGAPAT AVHTRDIVLQ VYRWAIERGQ KVENPADLVR PASIARFEPR DRTLTPAEIG LMYRYMEKVG TTPSIRAAVK LLLLTMVRKS ELTNATWNEI NFSEALWTIP KERMKRRNPH LVFLSRQAMD ILIALKTFAG GSDYILPSRY DSDAPMSSAT MNRVMDLTYK AAQKEGQSLS KFGPHDLRRT ASTLLHEAGY NTDWIEKCLA HEQKGVRAVY NKAEYREQRA SMLQDWADMI DEWTGQKF
|
| |