Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_004334 |
Symbol | |
ID | 8558095 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 3023677 |
End bp | 3025281 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646407456 |
Product | conjugative transfer protein TrbL |
Protein accession | YP_003286957 |
Protein GI | 262395103 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3846] Type IV secretory pathway, TrbL components |
TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAATA TTATGTTTGG TAGTTTTTTC GTGGTCGTGA TTTTCCTGTT GCCTGGAGTA GCTGTTGCTG ATGAATTGAG CAGCAGCGGA GTTATGAATG ATGTGCTTAG CCGCTTTCAC GGTGCTACAT CGATGTGGGG GCCCACGATT GAGGCAGCAG CAACTCGGCT TTTTTGGACG TTAGTGATTA TTTCAATGGT GATTACTTTT GGGTTCATGT TGCTACGCAA AGCCGATATC GGTGAGTTCT TCGCTGAATT CATACGCTTC ACTCTTTTTA CGGGTTTTTA CTGGTGGTTA CTATCCAACG CTACGCATGG GATGAATATC GCGGGAACAA TTGTTGATTC ATTGCAACAA CTTGGGGCTG ATGCCGGAGG GCTTAGCAGT AGTAAGCTCG GGCCATCGAG TATTTTAGAT ATGGGGTTTG AGCTTTATGA CAAAACTGTC GAGGCTACTT CAGAACTCAG TTGGAGGCAG TTCCCTACAG CATTAATGAT GGAACTTATG GCTTTAGCTG TGTTGGTTGT TTTGGCTATT GTTTCTGTCA ACTTACTGCT TCTTTTAACG GCCAGTTGGA TACTGCTTTA TGCCGGGGTT TTCTTTTTAG GCTTTGGAGG CTCTCGTTGG ACCTCTGACA TAGCAATTAA CTATTACAAA GCCATATTAG GTTTGGCTGC TCAATTGCTG GCGATGGTGC TGATCGTTGC CATTGGTAAG CAGTTTCTCG TGGATTATCA CAGCCAAATG AGTTCTGAGA ACATGGCAAG TCAAGAGCTG GCCGTTATGT TGGTTATATC TCTGATTTTA CTGTTTTTGG TAGACAAGGT TCCCCCTATG CTTTCCGGCT TGGTATCAGG TGGCAGTGTC GGTTCTACAG GAATTGGCTC ATTTGGTGCT GGTGCTGCTG TAGGAGCTAC TATGACAGCA GCTAGTATGG GAATTTCAGG GGCTAAAATG GCAGGCTCTG CGGTGTTGGG AGGTGCCGCA AATGCTGTTG GTGGAGCGAA TACCATCAAA GCGGCTGTTA CTAAAGCCCA GTCTAGTTTG TCAGGGGAAG ATATGTCGAG CTTTAGTAGC AGTAATTTTA ATGATACTAG CGAAAGCTCG GGTCGCGAGG GTTCGAGCAG CGACTACGCT GGTACTGGAG AATCCCCATT TGCTCAAGCA GCAGGGTTTA GTCATGCTTC CTCTTTGGCT GCTGGCACTG CAAGCGAATT GGCTAAAGGG GTGGGAGCAA AGGTAGCAGA GAAGTTTCAG GACACAGTCA ACCAGACGGC AGGCGGTCGT TTGGCCACCT CCATACGCGA GAGTATGGAA TCTAATGGCG ACAACAAAGA ATCCGTGGAG GGCAACTCTT CACTGTCCTT TGATAGCGAT AGCTTGAGTG GTGACAATGG CGGCTGGATA AACAAAACTG GTGGCTTTGA TTCTCTGTCC AGTGAAGATC AGGAGAAAGC TCGCCAATCA CACGCCGAAT GGCAAGAACG TGACCCAGAA AAGCACGCTT CCAATGTCGA GGATTATGTT TCGTATGCCC AGGAACGCCA GCAGGAGCGC AACGAAGAGG TTGCCAGCTT TGTTAAAAAA GGCTGTATGG CATAA
|
Protein sequence | MKNIMFGSFF VVVIFLLPGV AVADELSSSG VMNDVLSRFH GATSMWGPTI EAAATRLFWT LVIISMVITF GFMLLRKADI GEFFAEFIRF TLFTGFYWWL LSNATHGMNI AGTIVDSLQQ LGADAGGLSS SKLGPSSILD MGFELYDKTV EATSELSWRQ FPTALMMELM ALAVLVVLAI VSVNLLLLLT ASWILLYAGV FFLGFGGSRW TSDIAINYYK AILGLAAQLL AMVLIVAIGK QFLVDYHSQM SSENMASQEL AVMLVISLIL LFLVDKVPPM LSGLVSGGSV GSTGIGSFGA GAAVGATMTA ASMGISGAKM AGSAVLGGAA NAVGGANTIK AAVTKAQSSL SGEDMSSFSS SNFNDTSESS GREGSSSDYA GTGESPFAQA AGFSHASSLA AGTASELAKG VGAKVAEKFQ DTVNQTAGGR LATSIRESME SNGDNKESVE GNSSLSFDSD SLSGDNGGWI NKTGGFDSLS SEDQEKARQS HAEWQERDPE KHASNVEDYV SYAQERQQER NEEVASFVKK GCMA
|
| |