| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004326 |
|---|
| Symbol | |
|---|
| ID | 8558087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 3011518 |
|---|
| End bp | 3012774 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646407448 |
|---|
| Product | D-amino acid dehydrogenase small subunit |
|---|
| Protein accession | YP_003286949 |
|---|
| Protein GI | 262395095 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTCA TCGTATTAGG CAGCGGCGTC ATCGGCTTAA CCTCTGCTTG GTATTTATCT
CAAGCAGGCT ATCAAGTTAC CGTTATTGAC CGTCAACCAA GCAGTGCAAT GGAAACAAGT
TTCGCCAATG CTGGGCAGAT CTCGTATGGC TATTCTTCGC CTTGGGCTGC GCCTGGTGTT
CCTGTTAAAG CCATAAAGTG GTTAATGGAA GAGCATGCTC CACTCAAAAT CAAACCAACC
CTCAATGCCG ATATGATCAG TTGGGCAAGT AAGATGGTGG CCAACTGCAC CCTGTCTCGC
TACCAAGTCA ACAAAGCTCG CATGCTTTCG ATAGCTAACC ACAGTCGTAT GTGTCTGGAA
CAATTACGTC AAGAACATGC CATTGAATAT CAAGGTCGCC AGTTCGGCAC CTTGCAAGTA
TTTCGAACGC CTCAACAGCT GCAAGCCATT GAAAAGGATA TGCAGCTTCT AGAGCAAAGC
GGGACTCGGT TTGAGTTGAT GGACGTAGAA CGCTGCATTG AACAAGAACC TGGACTGGAT
CTTGTGAAAG ATAAGCTGGT TGGTGGCTTG CACCTGCCAG ATGACGAAAC AGGCGATTGC
TATCAGTTTT GCCAACAACT AACAGAGCTC GCTAAGGCCC ATGGCGTCAG GTTCGAGTTC
GACACCGAAG TAAGCAATTG GGTTACAGTA GGCAAAAAGA TCATGGGTGT CCAAACGAAC
CGAGGACAGT TTAAAGCGGA CCAATATGTG GTTGCCTCTG GCAGCTATTC TACAGCGCTA
CTCAAGCAAA TCGACATTGA AATTCCTGTC TATCCAGTAA AAGGCTATTC GCTCACCATC
CCAATGAAAG ATGAGCACTT CTCTCCTCGC TCTACTGTGA TGGATGAAAC CTATAAAGTC
GCCATGACTC GGTTTGATGA CAGAATTCGC GTAGCGGGCA CCGCAGAATT AGCAGGGTTT
GATGCCTCCC TTCCGCAAAA ACGAAAAAAT ACCATCGAAA TGGTCATCCG TGATCTTTTC
CCTCGCTGCG GCGACTTTAA CCAAGCCGAG TTTTGGAGTG GCTTTAGACC AATGACGCCT
GATGGCACAC CGATTATCGG CGCGACCAAA TACGATAACC TTTTTACTAA CACTGGACAC
GGTACTCTGG GTTGGACTAT GGCTTGTGGT TCTGGTCAAT TACTAGCGAG CATTATGGCT
GGTGAAAAAG CGAAAGTGAT GGATGACACA GAGCTTAACC TTTGCCGTTA TGCATAA
|
|---|
| Protein sequence | MEVIVLGSGV IGLTSAWYLS QAGYQVTVID RQPSSAMETS FANAGQISYG YSSPWAAPGV
PVKAIKWLME EHAPLKIKPT LNADMISWAS KMVANCTLSR YQVNKARMLS IANHSRMCLE
QLRQEHAIEY QGRQFGTLQV FRTPQQLQAI EKDMQLLEQS GTRFELMDVE RCIEQEPGLD
LVKDKLVGGL HLPDDETGDC YQFCQQLTEL AKAHGVRFEF DTEVSNWVTV GKKIMGVQTN
RGQFKADQYV VASGSYSTAL LKQIDIEIPV YPVKGYSLTI PMKDEHFSPR STVMDETYKV
AMTRFDDRIR VAGTAELAGF DASLPQKRKN TIEMVIRDLF PRCGDFNQAE FWSGFRPMTP
DGTPIIGATK YDNLFTNTGH GTLGWTMACG SGQLLASIMA GEKAKVMDDT ELNLCRYA
|
|---|
| |