Gene VEA_004258 details

Gene Information

• Locus tag: VEA_004258
• ID: 8558019
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 2937108
• End bp: 2938973
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 646407380
• Product: 1-deoxy-D-xylulose 5-phosphate synthase
• Protein accession: YP_003286881
• Protein GI: 262395027
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCTTG ATATTTCAAA GTACCCAACA CTGGCGTTAG CAAATACACC GGAAGAATTA 
CGTCTCCTTC CGAAAGAAAC ATTACCAAAT CTGTGTGATG AACTGCGAAC GTATCTGCTA 
AATTCAGTGA GCCAATCTAG CGGACACTTA GCGTCTGGCT TAGGCACCGT GGAGCTAACT 
GTCGCTCTGC ATTATGTTTA CAACACCCCT ATCGACAAAT TGATCTGGGA TGTTGGTCAT 
CAGGCTTACC CGCATAAAAT CCTCACCGGA CGTCGCGATA AAATGCCAAC AATTCGCCAA 
AAGGATGGTC TACACCCTTT CCCTTGGCGT GAAGAAAGTG AATATGACAC CTTATCTGTC 
GGCCACTCTT CGACATCGAT TAGTGCAGGT CTTGGCATGG CCATCAGCGC ACAAAAAGAA 
GGTAAAGGTC GTAAAATCGT CAGTGTGATT GGTGATGGCG CAATTACAGC AGGCATGGCA 
TTCGAAGCCA TGAACCACGC TGGCGACGTT CATCCTGATA TGTTGGTGAT TTTGAACGAC 
AACGAAATGT CGATTTCGGA AAACGTCGGC GCCCTGAATA ACCACCTTGC GAAGGTACTT 
TCTGGTAGCT TGTACACTTC TATCCGTGAA GGCGGTAAGA AAGTGCTGTC TGGTGTTCCA 
CCTATTAAAG AGTTGGTTCG CCGTACAGAA GAGCACCTCA AAGGCATGGT AGTGCCTGGT 
ACTCTATTCG AAGAGTTCGG CTTTAATTAC ATTGGCCCGA TTGATGGGCA CGACGTCAAT 
GAACTCGTCA AAACGCTAAA AAACATGCGT GAGCTCAAAG GTCCTCAGTT CCTACACATC 
ATGACCAAGA AAGGCAAAGG TTATGAGCCT GCCGAGAAAG ATCCTATCGG CTACCATGGT 
GTTCCTAAAT TCGATCCAAC GCATAACTGT CTACCGAAAA GCAGTGGCGG TAAGCCAACT 
TACTCAAAGA TCTTTGGTGA CTTTTTATGT GACATGGCGG CCCAAGATCC TAAGCTAATG 
GCAATTACGC CAGCAATGCG CGAAGGCTCT GGTATGGTAC GTTTCTCAAA AGAATATCCA 
GACCAATACT TTGACGTGGC GATTGCTGAG CAACACGCTG TGACACTTGC AACAGGCATG 
GCAATTGCGG GCGATCATCC AATCGTTGCT ATCTATTCGA CTTTCTTGCA ACGTGGTTAT 
GACCAACTGA TCCACGATAT CGCGATCATG GATTTACCAG TAATGTTCGC TATCGACCGT 
GCAGGTCTCG TTGGTGCAGA TGGCCAAACT CACCAAGGCG CATTCGATCT AAGCTTTATG 
CGCTGTATTC CGAACATGGT GATCATGGCG CCAAGTGACG AAAACGAATG TCGACAAATG 
CTTTACACTG GCCATAAACA TACTGGCCCG AGTGCGGTTC GATACCCTCG CGGTAGCGGG 
ATGGGCGTAG AAATCGAAAC TGAGTTTACG GCTTTAGAAA TCGGTAAAGG ACGCATGGTT 
CGCCAAGGTG AAAAAGTTGC TATTCTGAAC TTTGGTACTT TCTTGGGTAA CGCGCTAGAA 
GCGGCAGAAT ACCTTAACGC CACTGTTGCT GATATGCGCT TTGTGAAGCC GCTCGATGAA 
GCATTAATTC GTCAATTAGC CGCAGATCAT GACGTGCTCG TGACGTTAGA AGAAAATGTT 
ATCGCAGGTG GTGCAGGTGC AGGTGTCGTT GAGTTTATGA TGAAAGATAA AATCATTAAG 
CCAGTCTTAA ACATAGGCTT ACCCGATGAG TTTATTCATC AAGGAACACA AGATGAACTG 
CATGAAGAGC TTGGTCTCGA TGCAAAAGGG ATTGAAAAAT CCATCTTGGA TTATTTAGCA 
AAATAG 

 

Protein sequence

MTLDISKYPT LALANTPEEL RLLPKETLPN LCDELRTYLL NSVSQSSGHL ASGLGTVELT 
VALHYVYNTP IDKLIWDVGH QAYPHKILTG RRDKMPTIRQ KDGLHPFPWR EESEYDTLSV 
GHSSTSISAG LGMAISAQKE GKGRKIVSVI GDGAITAGMA FEAMNHAGDV HPDMLVILND 
NEMSISENVG ALNNHLAKVL SGSLYTSIRE GGKKVLSGVP PIKELVRRTE EHLKGMVVPG 
TLFEEFGFNY IGPIDGHDVN ELVKTLKNMR ELKGPQFLHI MTKKGKGYEP AEKDPIGYHG 
VPKFDPTHNC LPKSSGGKPT YSKIFGDFLC DMAAQDPKLM AITPAMREGS GMVRFSKEYP 
DQYFDVAIAE QHAVTLATGM AIAGDHPIVA IYSTFLQRGY DQLIHDIAIM DLPVMFAIDR 
AGLVGADGQT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGHKHTGP SAVRYPRGSG 
MGVEIETEFT ALEIGKGRMV RQGEKVAILN FGTFLGNALE AAEYLNATVA DMRFVKPLDE 
ALIRQLAADH DVLVTLEENV IAGGAGAGVV EFMMKDKIIK PVLNIGLPDE FIHQGTQDEL 
HEELGLDAKG IEKSILDYLA K