| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004196 |
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| Symbol | |
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| ID | 8557937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 2869802 |
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| End bp | 2870959 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646407298 |
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| Product | ribosomal large subunit pseudouridine synthase F |
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| Protein accession | YP_003286819 |
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| Protein GI | 262394965 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00815873 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAAG ACAACGCTAA ACGATTAAAT AAATTCATCA GTGAAACTGG CTTTTGTTCA
CGCCGTGAGG CAGACAGACT AATTGAACAA GGTCGTGTCA CCATTAATGG AAACAAGCCT
GAAATGGGAA CAAAAGTGCT ACCTGGTGAT GATGTTTGTG TGGATGGTAA GCCAGTTGCA
GCAAAAGAGA AGCCGATTTA TATCGCTCTC AATAAACCAA CAGGCATCAC CTGTACAACA
GAACGAGATG TACCTGGAAA CATCGTTGAT TTTATCGGTC ACAAAAAACG TATCTTTCCG
ATCGGCCGCT TGGATAAACC CTCTGATGGT CTGATTTTTT TGACCAACGA TGGCGATATC
GTCAACAAAA TCCTCCGTGC TGGCAACAGC CACGAAAAAG AGTACGTTGT GCGCGTGGAC
AAACCGATTA CAGGTGAGTT TCTTAAACAG ATGTCGAGCG GCGTTAAGAT TCTCGATACC
GTCACTCTAC CTTGTAAGGT AACGAAAGAG ACTAAGTTCT CTTTCCGTAT TGTGCTCACT
CAAGGACTTA ACCGCCAAAT CCGTCGTATG TGTGAAGCAC TAGGTTACGA AGTCTTTAAG
CTTCGTCGTG TTCGAATCAT GAATATCTCT CTTGACGGTA TTCCGAACGG AAAATGGCGT
TACTTAACTG ACGATGAAGT CGCTGAGATT CTTGCTATGT GCGATGGTTC GGTGGGTACA
GAAGAGGCAT CTCGTGTTGA CTCAAAAGGC CGCAATATTC GTAAAGCGAC CGACGCGAAG
TTATATGACA GCCGTGAAGA AAACCAAGAC TCGGTATCTC GACGAAATCA AAAGCCACGT
ACCTACCGCG GAAATAACGC AGACGATTTT CGTCATGCTC CAAACTCGAA AAAAGGTCAA
CAAAAGCGTC GTCAGCGTGA CGATGAAGGC GGACGTCCAG CTAAAGAACA TTACAAAGCG
AAACCACAAG GTGAACGTAG CAGACCGCAA GGCGAGCATG GAAAATCACA CCGTAAACCA
GATGCATCGA GCAATACGCA CTCAGCAAAC AAGCCTCAAT CACCGAGTAA GCCTAAGCAG
CATTACATGA ACCCAAATGC CGCGAAGCCA AGCAAACCAG CTAAACGCAC CGGTGGTACA
TTGAGTCTGA AGAAGTAA
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| Protein sequence | MSQDNAKRLN KFISETGFCS RREADRLIEQ GRVTINGNKP EMGTKVLPGD DVCVDGKPVA
AKEKPIYIAL NKPTGITCTT ERDVPGNIVD FIGHKKRIFP IGRLDKPSDG LIFLTNDGDI
VNKILRAGNS HEKEYVVRVD KPITGEFLKQ MSSGVKILDT VTLPCKVTKE TKFSFRIVLT
QGLNRQIRRM CEALGYEVFK LRRVRIMNIS LDGIPNGKWR YLTDDEVAEI LAMCDGSVGT
EEASRVDSKG RNIRKATDAK LYDSREENQD SVSRRNQKPR TYRGNNADDF RHAPNSKKGQ
QKRRQRDDEG GRPAKEHYKA KPQGERSRPQ GEHGKSHRKP DASSNTHSAN KPQSPSKPKQ
HYMNPNAAKP SKPAKRTGGT LSLKK
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