| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004070 |
|---|
| Symbol | |
|---|
| ID | 8557809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 2731802 |
|---|
| End bp | 2733355 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 646407171 |
|---|
| Product | putative histidine ammonia-lyase protein |
|---|
| Protein accession | YP_003286695 |
|---|
| Protein GI | 262394841 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2986] Histidine ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase
[TIGR01226] phenylalanine ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACA ACAATAATCA CAACATCACT TTTGGTGCCC AATCTTTAAC CATCGAAGAT
GTCGTTGCCA TTGCTCAAGG TGCAAAGGCA AGCATGAACA CCTCGCCAAA ATTTACCGCG
AAGATCGATC GTGGCGTGGC GTTTCTGGAA CGATTACTGA AAGAAGAAGG CGTTATTTAC
GGCGTGACCA CGGGTTACGG CGATTCATGC ACTGTGGCGA TTCCACCCGC TCTTGTGGAT
GAACTTCCGT TGCACCTTAC GCGCTTCCAT GGCTGTGGCT TAGGTCAAAT CCTTTCTCAT
GAGCAAGCTC GCGCGGTGTT GGCGACACGT TTATGTTCAT TGTCGCAAGG CGTATCTGGC
GTGTCTCACG ATCTGTTGAA CCAAATCGTT ACGCTTATCA ATCACGACAT TGCGCCGCGT
ATTCCACAAG AGGGCTCGGT GGGCGCAAGC GGCGATTTAA CGCCTCTGTC TTACCTAGCG
GCGACCTTAA TTGGCGAGCG TGAAGTGCTT TACAAAGGCG ATGTGCGACC AACACAAGAA
GTGTTTGCAG AGCTGGGCAT TGAGCCAATT CGCCTAAAAC CAAAAGAAGG TTTGGCGTTA
ATGAACGGTA CATCCGTGAT GACTGCCCTC GCCTGTATTG CCTACAAACG CGCAGAATAC
CTAGCGCAGC TTTGCACCAA GATTACCGCG ATGGTTTCTG TGGGTATGCA AGGTAATGAC
TTCCACTTTG ATGAAGCGTT GTTTGCGGTA AAACCTCACC CTGGTCAACA GCAAGTTGCG
GCTTGGCTGC GTGATGATCT CAATGCTGAA CGTCCGCCAC GCAATAGCGA CCGACTGCAA
GATCGCTACT CGCTGCGTTG CGCGCCACAC GTAATTGGCA TGGTGCAAGA CTCACTGCCT
TGGCTACGTC AATTGATCGA GAATGAACTA AATAGTGCCA ACGACAATCC AATTATCGAT
GGCGACAACG AGCGCGTTCT CCACGGCGGT CACTTCTACG GTGGTCATAT CGCAATGGCG
ATGGATACGT TGAAAGTGAA CATTGCCAAC TTGGCTGATT TGCTGGACCG TCAGATGGCG
CAACTGATGG ATTACAAGTT CAATAACGGC CTGCCGTTTA ACTTAACCGG TGCAGAAGGC
GAGCGTAAAC CGATCAACCA CGGCTTTAAA GCGGTTCAGA TTGGTATCTC AGCTTGGACG
GCAGAAGCGT TGAAAAACAC CATGCCAGCG AGCGTTTTTT CTCGCTCAAC CGAATGTCAC
AACCAAGACA AAGTGAGTAT GGGCACCATT GCGGCTCGCG ATTGCTTACG CGTACTTGAG
TTAACAGAGC AAGTTGCTGC GGCTTCACTG CTGGCAAGCG TTCAAGCGGT TGAGATTCGT
CGCCGTCATA ACGAATTGGA CGAACACCAC ATGAGTCAGA GTTTGCGAGT AATTCGTGAC
GCCGTGCTGA GCGAGTTTGA ATTTGTGATT GAAGATCGCC CATTGGAACA AGATTTGCGT
CATTTCATTG AACGCATTCA GCAACGTCAT TGGCCACTCT ACGCGGAGGT ATAA
|
|---|
| Protein sequence | MTNNNNHNIT FGAQSLTIED VVAIAQGAKA SMNTSPKFTA KIDRGVAFLE RLLKEEGVIY
GVTTGYGDSC TVAIPPALVD ELPLHLTRFH GCGLGQILSH EQARAVLATR LCSLSQGVSG
VSHDLLNQIV TLINHDIAPR IPQEGSVGAS GDLTPLSYLA ATLIGEREVL YKGDVRPTQE
VFAELGIEPI RLKPKEGLAL MNGTSVMTAL ACIAYKRAEY LAQLCTKITA MVSVGMQGND
FHFDEALFAV KPHPGQQQVA AWLRDDLNAE RPPRNSDRLQ DRYSLRCAPH VIGMVQDSLP
WLRQLIENEL NSANDNPIID GDNERVLHGG HFYGGHIAMA MDTLKVNIAN LADLLDRQMA
QLMDYKFNNG LPFNLTGAEG ERKPINHGFK AVQIGISAWT AEALKNTMPA SVFSRSTECH
NQDKVSMGTI AARDCLRVLE LTEQVAAASL LASVQAVEIR RRHNELDEHH MSQSLRVIRD
AVLSEFEFVI EDRPLEQDLR HFIERIQQRH WPLYAEV
|
|---|
| |