| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003994 |
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| Symbol | |
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| ID | 8557730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 2640091 |
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| End bp | 2643552 |
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| Gene Length | 3462 bp |
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| Protein Length | 1153 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646407092 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003286619 |
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| Protein GI | 262394765 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.239612 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAAG CAACGATTCT TTCCGTCACC AATCCTTCTG AGCGTGGCGA CAAAAAACAG
CTAGGTAATT TACCGGGCGC GGCTCTACCT CTAGCTATTG CTGAGCTAGC CAAGCAGCAT
TCGAGTCACT CGCTACTCAT CGTGCCTGAC CCGCAAATCG CTTTAAAGCT TCAAGCGGAG
ATTGAACAAT TCACCGACCA AACAGTAAGC CTGTTCCCTG ATTGGGAAAC GCTGCCTTAC
GATAACTTTT CTCCGCATCA AGAAATCATC TCTGAACGTA TCGCGCGCCT ATACCAACTG
CCAAGCCAAC GTAATGGCAT AACCATCGTC CCGGTCAGTA CAGTATTGCA ACGCCAATCG
CCACGTGATT TTCTGTTGCA ACACACTTTA ATGGTGAAAA CTGGTGATCG ACTCTCGCTT
GAGAAACTAC GTGTACAACT TGAAAATTCG GGCTACCGCC ACGTAGACCA AGTATTTGGG
CCAGGTGAAT ACGCGAGCCG TGGGTCGATT CTGGATCTCT TTCCTATGGG CAGCGATGAC
CCGTATCGCA TCGACTTCTT TGATGATGAA ATAGATACCA TTCGCACGTT TGATCCAGAG
AACCAACGCT CTATCGACGA TATTCAGCAA ATCCAATTGC TGCCTGCGCA TGAGTTCCCA
ACCACTAAAG AAGCGATTGA GGATTTTCGT ACACGTTGGC GCACCCAATT TGAAGCACGC
CGAGAGCCAG AGTCGATCTA CATGCAAGTG ACCAAAGGCA CTTGGCCCCC GGGTATTGAG
TATTGGCAAC CGCTGTTTTT TGACCATACC GAGACTTTAT TTGAATATTT GCCAGAAGAC
TCTCAAGTCA TCACATATGG TGATATTGAA TCTGCGGTCG ATACTTTCTT AACCGATGTC
GAATATCGGT ACGACCAGAA AAAAGTTGAT CCACTACGTC CTCTTTTGAC TCCTGAACAA
CTTTGGCTGA AAAAAGACGA ACTCTTCAGC CAACTAAAAC AGCTCCCTAT GGCTCAATTG
AGCCTAGAGA AAGTGGTTAA GCGTGCTGGT CGTCAAAACC TACCAGTACA ATCGTTAGCC
GAGCTTGGCG TTCAGCAACA AAATAAAGAA CCGCTTTCGC GTCTTCGTCA ATTCAGTGAG
CAATTCAGCG GCAAAATTGT TTTCTCGGTA GAGTCAGAAG GTCGTCGTGA AGCACTAACG
GAACTGTTGC AAGGCATCAA AGTTCGCCCA GTCGTACATG GCTCACTTTA CCAAGCTCTA
GATTCGGGTG ACCGCTTCAG TTTGATCTTA GGCGCTGCAG AGCATGGTTT CATTCACGAA
GAGCTGAACT TCGCTCTGAT CTGTGAAAGT GATCTACTTG GTGACCGCGT TATCCAGCGA
CGCCGCAAAG ATAAAAAAGC AGTCAACAGT GACACCGTTA TTCGCCACCT TGCGGAACTA
AAACCCGGTC AACCCGTGGT TCATATTGAT CACGGTATTG GCCGCTACAT CGGTTTACAA
ACACTTGAAG CCGGTGGCAT GAAAACGGAA TACGTCACCC TTGAGTATCA AAACGATGCC
AAGCTCTACG TACCAGTTTC ATCACTAAAC CTTATTAGCC GTTATTCAGG CGGTGCTGAA
GAAAGTGCAC CACTGCATAA ATTGGGTGGC GAGGCTTGGG CAAAAGCACG TCGTAAAGCG
GCAGAAAAAG TGCGTGATGT CGCGGCCGAG TTGCTGGATG TTTACGCTAA ACGAGAATTA
AAACCAGGCT TCAAATTTGA GCTAGATCGT GGGCAATACG CAACGTTTAA AGCAACGTTC
CCATTTGAAG AAACGGATGA CCAAGCGATG GCCATCAATG CCGTCTTGTC AGACATGTGC
CAAGCAAAAG CGATGGATCG CCTAGTGTGT GGTGACGTGG GCTTTGGTAA AACAGAAGTC
GCTATGCGCG CAGCATTTGT CGCAACGGAT AACAGTAAAC AGGTCGCCGT TCTCGTACCG
ACAACTCTGC TTGCTCAGCA GCATTTCGAA AACTTCCGTG ACCGTTTTGC CAACTTACCA
ATCCGAGTTG AAGTACTGTC TCGTTTTAAA TCGGCCAAAG AACAAAAAGT CATTTTGCAA
GACGTTGCAG ATGGTAAAGT CGATATTGTC GTTGGTACGC ATAAGCTGCT TTCGAGCGAC
ATTAAATTCA AAGATTTAGG TTTGTTGATC GTTGATGAGG AACACCGCTT CGGAGTTCGT
CAAAAAGAAA AAGTCAAAGC AATGCGTGCG GATGTGGATA TTCTTACCCT CACCGCAACA
CCAATTCCAC GTACACTGAA TATGGCAATG AGTGGCATGC GCGATCTGTC GATCATCGCG
ACACCTCCAG CGCGTCGTTT AGCCATCAAA ACCTTTGTTC GTCAAAGAGA AGAATCTGTG
GTCCGTGAGG CGGTACTGCG TGAAATCATG CGTGGTGGTC AGGTTTACTT CCTGCACAAT
CAGGTAGAGA CTATCGAGAA AACCGCGGAA GACTTGCAAA AGCTTATTCC TGAAGCACGA
ATTACCGTGG CACATGGTCA AATGCGTGAG CGCGAACTAG AGCGCATCAT GAATGATTTC
TACCACCAGC GCTTTAATGT GTTGGTGTGT ACAACTATTA TCGAGACCGG TATCGACGTA
CCAACGGCGA ATACCATTAT TATGGATCGT GCAGACAACC TTGGTTTAGC GCAACTGCAC
CAATTGCGTG GCCGTGTTGG ACGCTCTCAT CATCAAGCCT ATGCTTACTT ATTAACGCCA
CATCCAAAAG CCATGACCAA AGATGCTATC AAGCGTCTTG ATGCGATTGC TTCACTGGAA
GACTTAGGCG CAGGCTTTAC TCTAGCAACT CACGACTTGG AAATCCGTGG GGCTGGTGAG
CTGCTTGGTG ACGAGCAAAG TGGGCAAATT CAATCGGTTG GTTTTACACT GTACATGGAA
ATGCTGGAAC AAGCAGTCCA AGCATTGAAA GAAGGTAAAG AACCTTCTTT GGACGAGCTG
CTTCGAGAAC AAACTGAAGT TGAAATGCGA ATCCCAGCGC TCTTGCCAGA CGATTACATC
CCGGATGTGA ATACACGACT GTCGATGTAC AAACGTATTG CGAGCGTTAC GAGTGGTGAA
GAACTCTCAG AGCTCAAAGT GGAACTTATC GATCGATTTG GACTGCTTCC AGACGCGACG
AAGAACTTAC TTGCTGTCTC AGAATTGAAA ATTTCGGCTG GTAGCCTAAA AGCGAAAAAG
ATAGAAGCCC ATGATAAGGG TGGATTTATC GAGTTTTACC CTGATGCTGA CATAAATCCA
GCGTATTTGG TTAAACTGCT GCAATCACAG CCGCAAAAAT TTGCAATGGA AGGTCCAACT
AAGTTCAAGT TTAGCGTACC ATTGGTGGAC CGACGTAAAC GCATTCAGTT TGTTCAAGAC
TTACTGAATG ATTTTAAACA GAATTTATTA CCAACGAGCT AA
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| Protein sequence | MTKATILSVT NPSERGDKKQ LGNLPGAALP LAIAELAKQH SSHSLLIVPD PQIALKLQAE
IEQFTDQTVS LFPDWETLPY DNFSPHQEII SERIARLYQL PSQRNGITIV PVSTVLQRQS
PRDFLLQHTL MVKTGDRLSL EKLRVQLENS GYRHVDQVFG PGEYASRGSI LDLFPMGSDD
PYRIDFFDDE IDTIRTFDPE NQRSIDDIQQ IQLLPAHEFP TTKEAIEDFR TRWRTQFEAR
REPESIYMQV TKGTWPPGIE YWQPLFFDHT ETLFEYLPED SQVITYGDIE SAVDTFLTDV
EYRYDQKKVD PLRPLLTPEQ LWLKKDELFS QLKQLPMAQL SLEKVVKRAG RQNLPVQSLA
ELGVQQQNKE PLSRLRQFSE QFSGKIVFSV ESEGRREALT ELLQGIKVRP VVHGSLYQAL
DSGDRFSLIL GAAEHGFIHE ELNFALICES DLLGDRVIQR RRKDKKAVNS DTVIRHLAEL
KPGQPVVHID HGIGRYIGLQ TLEAGGMKTE YVTLEYQNDA KLYVPVSSLN LISRYSGGAE
ESAPLHKLGG EAWAKARRKA AEKVRDVAAE LLDVYAKREL KPGFKFELDR GQYATFKATF
PFEETDDQAM AINAVLSDMC QAKAMDRLVC GDVGFGKTEV AMRAAFVATD NSKQVAVLVP
TTLLAQQHFE NFRDRFANLP IRVEVLSRFK SAKEQKVILQ DVADGKVDIV VGTHKLLSSD
IKFKDLGLLI VDEEHRFGVR QKEKVKAMRA DVDILTLTAT PIPRTLNMAM SGMRDLSIIA
TPPARRLAIK TFVRQREESV VREAVLREIM RGGQVYFLHN QVETIEKTAE DLQKLIPEAR
ITVAHGQMRE RELERIMNDF YHQRFNVLVC TTIIETGIDV PTANTIIMDR ADNLGLAQLH
QLRGRVGRSH HQAYAYLLTP HPKAMTKDAI KRLDAIASLE DLGAGFTLAT HDLEIRGAGE
LLGDEQSGQI QSVGFTLYME MLEQAVQALK EGKEPSLDEL LREQTEVEMR IPALLPDDYI
PDVNTRLSMY KRIASVTSGE ELSELKVELI DRFGLLPDAT KNLLAVSELK ISAGSLKAKK
IEAHDKGGFI EFYPDADINP AYLVKLLQSQ PQKFAMEGPT KFKFSVPLVD RRKRIQFVQD
LLNDFKQNLL PTS
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