| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003992 |
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| Symbol | |
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| ID | 8557728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2638058 |
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| End bp | 2639182 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646407090 |
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| Product | lipoprotein releasing system transmembrane protein LolC |
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| Protein accession | YP_003286617 |
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| Protein GI | 262394763 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGACGG CGGGTATTAC GATCGGTGTA ATGGCGTTGG TGACGGTTCT TTCTGTGATG
AATGGGTTCG AATCGCAGTT AAAAGAGCGC ATTTTAGGTG TGCTGCCTCA CGCTGTTGTT
TCACAACACG ATGGAAAAAC GCCGTTGACC GAGTCTGCCC CTCCATTTGT TCAAGCGATG
TCGAGTGAAT CTGAACCGGA GCCTATCGTT CGTGGAGAGG CCGTAATTCA GAGTTCTGCG
CAACTGACGG CAGGTTATCT CATTGGCATT GAACCAAAGA AAGGCGATCC GATTAGCAAC
CATTTGATTG CTGGGCGATT ATCGTCACTT CAAGCGGGCG ATTACAACGT CTTTTTAGGT
CATAGCTTGG CGCGCTCGCT AAAGGTATCA ATGGGGGATA AAGTGCGCTT AATGGTGACC
AACGCGACTC AGTTTACCCC ACTTGGCCGT ATTCCTAGCC AGCGCAATTT TACTGTCGCT
GGTATTTTCA ATACGGGATC GGACGTTGAT GGTCAATTAA TGATTGTGAA CATGACGGAT
GCATCTAAGC TGATGCGTTT CCCTAAAGAC ACGGTTTCTG GTTGGCGTGT CTTTTTCTCT
GACCCATTTA TGGTGACGGA TTTTGCTGAT CAACCCATGC CTGACGGGTG GCAATGGAGT
GATTGGCGCG AGCAGCGTGG TGAGCTTTTC CAAGCGGTGA AAATGGAAAA GAACATGATG
GGACTCATGC TAGGTCTGAT AGTGGGCGTT GCTGCATTCA ATATTATCTC CGCCTTAATC
ATGGTGGTGA TGGAGAAACA ATCAGAAGTC GCAATATTGA AAACTCAAGG CATGACTCAA
TCTCAAGTGA TGGCCATTTT CATGGTACAA GGGGCGAGCA GCGGTGTAAT TGGCGCGATT
GTCGGTGGCG CTGCGGGAGT GATCTTGTCA CTTAACCTGA ATGCGATTCT TGAATCTGCC
GGTGTGGCGC TATTCAGTTT CGGTGGCCAT CTACCTATTT TGATTGATTC ACTGCAAATT
CTTTTAGTGG TGGTGTTGGC GATTGCTCTT AGCCTCGCTG CTACGCTTTA TCCTTCTTAT
CGAGCATCTT CTGTTAAACC TGCTGAGGCA CTTCGCTATG AATAA
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| Protein sequence | MSTAGITIGV MALVTVLSVM NGFESQLKER ILGVLPHAVV SQHDGKTPLT ESAPPFVQAM
SSESEPEPIV RGEAVIQSSA QLTAGYLIGI EPKKGDPISN HLIAGRLSSL QAGDYNVFLG
HSLARSLKVS MGDKVRLMVT NATQFTPLGR IPSQRNFTVA GIFNTGSDVD GQLMIVNMTD
ASKLMRFPKD TVSGWRVFFS DPFMVTDFAD QPMPDGWQWS DWREQRGELF QAVKMEKNMM
GLMLGLIVGV AAFNIISALI MVVMEKQSEV AILKTQGMTQ SQVMAIFMVQ GASSGVIGAI
VGGAAGVILS LNLNAILESA GVALFSFGGH LPILIDSLQI LLVVVLAIAL SLAATLYPSY
RASSVKPAEA LRYE
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