| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003987 |
|---|
| Symbol | |
|---|
| ID | 8557723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2631406 |
|---|
| End bp | 2633154 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 646407085 |
|---|
| Product | lipid A export ATP-binding/permease protein MsbA |
|---|
| Protein accession | YP_003286612 |
|---|
| Protein GI | 262394758 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATAA ATACTGATGA AACGACTTGG CAGACGTTTA AGCGTCTATG GCAATTTATT
CGCCTTTACA AGTCAGGTCT TGTCGTTGCA GTCATTGCAT TAGTTATTAA TGCTATATCA
GATACCTATA TGATTTCCCT ATTAAAACCA TTACTAGATG AAGGTTTTGG GAACGCTGAA
TCTGATTTTC TACGCACGCT TCCATTGATT ATTTTTGCCA TGATGTTTGT CCGTGGCATA
AGTGGATTTG TCTCCACATA CTGTTTGAGC TGGGTATCCG GCAATGTGGT TATGCAAGTC
CGCCGTATGG TATTCAATCA CTTTATGCAT ATGCCTGTGT CTTACTTCGA TAAGGAAAAG
ACGGGCAATT TATTGTCACG CATTACCTAC GATTCAGAGC AAGTCTCTGC GGCAACTAGC
CAAGCGTTAG TGAGCATCGT TCGCGAAGGT GCAAGTATCA TTGGCCTGTT AGTCCTGATG
TTTTACAACA GCTGGCAGTT GTCGTTAGTG CTGTTTGCTG TTGCTCCTGT TGTCGCGTGG
GGTATTGGTG TCGTTTCTAA ACGTTTTAGA AAAATATCCA AAAATATGCA GACAATGATG
GGCAACGTTA CTGCGTCAGC AGAGCAGATG CTTAAAGGCC ATAAAGTCGT GCTGAGCTAC
GGTGGCCAGG ATATCGAGCG TCAACGATTT GAGAAGGTCA GCAACCAAAT GCGTCAACAA
AGCATGAAGT TGGTGACTGC TCAAGCAGCG GCTAACCCTA TCATCCAAAT GATTGCGTCA
CTTGCTATTG TTGCCGTTCT TTACTTAGCA AGTATTGACT CGATTAAAGA GCAACTGACT
CCAGGTACAT TTACCGTTGT CTTCTCTGCG ATGTTTGGTT TGATGCGTCC GCTTAAAGCG
CTTACTAACG TTACCTCTCA GTTCCAACGT GGTATGGCCG CGAGCCAAAC GCTCTTTGCG
TTGATTGACC TTGAGCCTGA GAAAAACGAA GGTAAGTTGA CAGTTGAACG CGCAAATGGC
GATGTTTCAG TTAAAAACGT AAGCTTTACT TATACTGGCG CAGAAAAGCC AGCATTGGAA
AATGTCAGCT TCGATATTCC AAGAGGGAAG ACCGTTGCGC TGGTTGGTCG TTCCGGTTCC
GGTAAAAGTA CCATCGCGAA CTTGTTCAAT CGTTTCTATG ATGTTGATAG TGGCTCTATC
ACATTAGACG GACATGATAT TCGTGAATAC GAGTTAAAGA ACTTGCGTCA GCAGTTTGCG
CTAGTATCAC AAAATGTTCA TTTATTTAAT GACACGATTG CAAACAATAT TGCTTACGCA
ACGGATGGAA AATACGAGCG TAGTGATATC GAGAAAGCGG CAAAACTCGC GCATGCTATG
GAATTCATCA GCAAAATGGA TGATGGACTT GATACCATGA TTGGTGAAAA TGGCGCGAGT
CTATCTGGCG GTCAACGTCA ACGTGTCGCT ATTGCACGTG CTCTATTGCG TGATGCACCG
GTATTGATTC TTGATGAGGC GACCTCTGCT TTGGATACGG AATCAGAACG CGCTATCCAA
GCTGCATTAG ATGAGCTGCA GAAAGACAAA ACGGTACTCG TGATTGCGCA CCGCTTGTCA
ACTATCGAGA AAGCCGATGA GATTCTTGTG GTTGATGATG GCGCCATCAT TGAGCGTGGC
AACCATGCCG ATCTGATTGC AAAAAATGGT GCGTATGCAC AATTGCACCG TATTCAGTTT
GGTGAATAG
|
|---|
| Protein sequence | MSINTDETTW QTFKRLWQFI RLYKSGLVVA VIALVINAIS DTYMISLLKP LLDEGFGNAE
SDFLRTLPLI IFAMMFVRGI SGFVSTYCLS WVSGNVVMQV RRMVFNHFMH MPVSYFDKEK
TGNLLSRITY DSEQVSAATS QALVSIVREG ASIIGLLVLM FYNSWQLSLV LFAVAPVVAW
GIGVVSKRFR KISKNMQTMM GNVTASAEQM LKGHKVVLSY GGQDIERQRF EKVSNQMRQQ
SMKLVTAQAA ANPIIQMIAS LAIVAVLYLA SIDSIKEQLT PGTFTVVFSA MFGLMRPLKA
LTNVTSQFQR GMAASQTLFA LIDLEPEKNE GKLTVERANG DVSVKNVSFT YTGAEKPALE
NVSFDIPRGK TVALVGRSGS GKSTIANLFN RFYDVDSGSI TLDGHDIREY ELKNLRQQFA
LVSQNVHLFN DTIANNIAYA TDGKYERSDI EKAAKLAHAM EFISKMDDGL DTMIGENGAS
LSGGQRQRVA IARALLRDAP VLILDEATSA LDTESERAIQ AALDELQKDK TVLVIAHRLS
TIEKADEILV VDDGAIIERG NHADLIAKNG AYAQLHRIQF GE
|
|---|
| |