| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003960 |
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| Symbol | |
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| ID | 8557696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 2600554 |
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| End bp | 2601255 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646407058 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_003286585 |
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| Protein GI | 262394731 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCTC GTACAGGTCA TGAAAAAGGT CGCGGTCGCA ATCAATCCCA AACGGGCCGA
TTTAAACACT CAGGAGCTCG CAATAGCTCA AAGACTCGTA CTCAAACAAA CCGTCGCCCT
GTTCGCTCAG CAAGAAACCA AAAGCCAAAA GTGGATCCAA AAGACCGTAA AGTCATTATA
TTCAACAAGC CTTACGACAC GCTCAGTCAA TTTACCGATG GTGATGGTCG CAAAACGTTA
GCGGACTATA TCCCAGTCAA AGATGTCTAT GCGGCTGGCC GATTGGACCG AGACAGCGAA
GGTTTGATGG TGCTCACTAA CGATGGCATC TTGCAGGCGA AGCTCACGCA GCCAAAGTCA
AAATCCCCGA AGACTTATTG GGTTCAAGTC GATGGCGCTC CTCTAGAGCA AGATCTTGAA
AAATTGAGAA AGGGAGTAGA GCTAAAAGAT GGTATGACCC TACCAGCCGA AGTTGAAGTG
ATTCCAGAAC CACAAGTCTG GGATAGAACC CCTCCTGTTC GTTTTCGCGC AAATATCCCT
ACCACTTGGT TAGCCATTAC CATTATTGAA GGAAGAAATC GTCAGGTGCG TCGCATGACT
GCGCACATTG GCTTCCCTAC TTTGCGCCTC ATTCGTCATT CGATGGGTGA TATCGTCCTT
AAAGACCTAA TGCCTGGTGA ATGGAGAGAA ATCTCTCTCT AA
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| Protein sequence | MSSRTGHEKG RGRNQSQTGR FKHSGARNSS KTRTQTNRRP VRSARNQKPK VDPKDRKVII
FNKPYDTLSQ FTDGDGRKTL ADYIPVKDVY AAGRLDRDSE GLMVLTNDGI LQAKLTQPKS
KSPKTYWVQV DGAPLEQDLE KLRKGVELKD GMTLPAEVEV IPEPQVWDRT PPVRFRANIP
TTWLAITIIE GRNRQVRRMT AHIGFPTLRL IRHSMGDIVL KDLMPGEWRE ISL
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