| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003948 |
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| Symbol | |
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| ID | 8557684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2586960 |
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| End bp | 2589590 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646407046 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_003286573 |
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| Protein GI | 262394719 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0644345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAT CACTCGTTAT AGTGGAGTCA CCAGCCAAGG CAAAGACGAT AAATAAGTAC
CTTGGTAAAG ACTTTATTGT TAAGTCTAGT GTTGGTCATG TGCGTGATCT GCCTACGGCC
GGTCAAAGCA CTGGTGAGAA AAAAGCCGCA GCCATCTCAA CAAAAGGGAT GAGTCCGGAA
GAGAAAGCGC GCGTTAAAAA AGAGAAAGAC CGCAAAGCGT TGATCAAAAA AATGGGGATT
AACCCATATC ATGACTGGGA AGCGAATTAC CAAATCCTTC CAGGCAAAGA AAAAGTTGTC
AACGAACTAC AAAAACTCGC CAAAGACGCA GATTGCGTTT ATCTCGCAAC CGACTTGGAC
CGCGAAGGGG AAGCAATCGC ATGGCACCTT CGTGAGATCA TCGGTGGCGA TGAAGAGCGA
TACAAACGTG TAGTTTTTAA CGAAATTACG AAAAACGCGA TCCAACAAGC TTTCCAAACA
CCTGGAGAGC TGAACATGGA TGGTGTTAAT GCCCAACAAG CGCGTCGCTT CATGGACCGT
GTCGTTGGTT TTATGGTTTC ACCTCTACTT TGGAAAAAAG TGGCTCGTGG TTTATCTGCT
GGTCGCGTGC AGTCTGTTGC GGTGAAACTA TTAGTTGAGC GTGAGCGTGA GATTAACGCG
TTTGTACCAG AAGAATTCTG GGATATTCAT GCGAATACGA AAACGAAAGA CAAAGCGGAC
TTTAAACTAC TTGTTGCTCA GAAAGATGGT TCTGCGTTTA AGCCAGTTAA TGAGGCAGAA
ACCAAAGCAG CGATGTCTGT GCTTGAGAAT GCAAGTTACG AAGTATGTAA GCGTGAAGAT
CGCCCGACGA AGAGCAAGCC TTCAGCACCT TACATCACCT CTACGCTTCA ACAGGCAGCG
AGTACACGTC TTGGCTACGG CGTGAAAAAG ACCATGATGC TAGCTCAGCG CCTCTATGAG
GCCGGTTATA TCACTTATAT GCGTACGGAC TCGACTAACC TAAGTGCCGA GGCTGTGGAC
GCTGTACGTG ATTTTATTGG TTCTGAGTTT GGTGATAAGT ATTTACCAGC GAAACCGCTG
ACGTATGGCA GTAAAGAAGG GGCACAGGAA GCGCACGAAG CGATCCGTCC TTCAAATGTG
GGTGTTAAAG CGGAAGACCT GCAAGGTGTC GATGCTGATG CGCACAAACT TTACGCTTTG
ATTTGGAATC AGTTTGTCGC GTGTCAAATG ACACCAGCAG AATACGATTC AACAACCATC
AGCGTAAAAG CAGCAGAATA CACGCTTAAA GCGAAAGGCC GTATCCTTAA ATTTGACGGC
TGGACTCGTG TACAACGTCC AATGGGCAAA AACGAGGATA CAATCCTTCC TGCGGTACAA
CTTGGCGATA AGCTAAGCTT AGAGTCACTT GACCCTAAAC AGCACTTTAC AAAGCCACCT
GCGCGCTACA CTGAAGCAGC ACTGGTTAAA GAGCTGGAAA AACGAGGTAT TGGTCGTCCT
TCGACTTATG CATCGATCAT TTCTACGATT CAAGATCGTG GTTACGTAAA AGTTGATCAG
CGTCGTTTCT ACGCCGAAAA AATGGGCGAA ATTGTTACCG ACCGCCTTGA TGACAGCTTT
AACGATTTAA TGAACTACGA CTTCACCGCC CGCATGGAAC AGAAACTGGA CCAAATCGCT
GAAGGTGAAG TGAACTGGAA AGCAGTGCTA GATAACTTCT TTGCTGATTT CACTGGCGAT
CTTGAAAAAG CGGAATTGGA TGAGTCAGAA GGCGGTATGA AGCTAAACCA TATCGTCATG
ACGGATATCG AATGTCCGAC GTGTAGCCGT CCAATGGGTA TCCGTACTGC TTCGACAGGT
GTGTTCTTAG GCTGTTCTGG TTACGCGTTA CCACCAAAAG AGCGTTGTAA GACAACCATC
AACTTGGGTG ACGAAGAAGG TATTATTAAC GTTTTAGAAG AAGACGTTGA AACGGCCGCG
CTTCGTGCTA AAAAGCGTTG TCCGATCTGT GAAACGGCGA TGGATGCGTA CCTGATTGAT
GACAAGCGTA AGATGCATGT TTGTGGTAAT AACCCGAACT GTGAAGGCTA CCTTGTTGAA
TACGGTGAGT TCAAAGTCAA AGGCTATGAT GGTCCAGTTG TTGAATGTGA CAAATGTGGC
TCTGATATGG TGCTTAAGAA CGGTCGCTTT GGTAAATACA TGGACTGTAC GAGTGAAACG
TGTAAGAACA CTCGTAAGAT TCTGAAGAAT GGCGAAGTCG CGCCACCGAA AGAAGATCCT
GTTCATTTCC CCGAGTTGCC TTGTGAAAAC TCAGATGCGT ATTTCGTACT TCGTGATGGT
GCTTCAGGTC TATTTATGGC GGCAAGCAAC TTCCCGAAAT CGCGCGAGAC ACGTGCTCCT
TTGGTTGCTG AACTGGCACG TTTTGAAGAG CGTTTACCTG AGAAGTTCAA ATACCTAGCG
ACCGCACCGC AAGAAGATCC TGATGGTCGT CCTGCAGTTG TACGCTTTAG TCGCAAAACA
AAAGAGAACT ACGTTCGTTC GGAAGAGAAC GGCAAACCAT CTGGTTGGAC AGCGCTCTTT
GTTGAAGGTA AGTGGGAAGT CACAGATAAG CGTAAAAAAG CGAAAGCATA A
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGKDFIVKSS VGHVRDLPTA GQSTGEKKAA AISTKGMSPE
EKARVKKEKD RKALIKKMGI NPYHDWEANY QILPGKEKVV NELQKLAKDA DCVYLATDLD
REGEAIAWHL REIIGGDEER YKRVVFNEIT KNAIQQAFQT PGELNMDGVN AQQARRFMDR
VVGFMVSPLL WKKVARGLSA GRVQSVAVKL LVEREREINA FVPEEFWDIH ANTKTKDKAD
FKLLVAQKDG SAFKPVNEAE TKAAMSVLEN ASYEVCKRED RPTKSKPSAP YITSTLQQAA
STRLGYGVKK TMMLAQRLYE AGYITYMRTD STNLSAEAVD AVRDFIGSEF GDKYLPAKPL
TYGSKEGAQE AHEAIRPSNV GVKAEDLQGV DADAHKLYAL IWNQFVACQM TPAEYDSTTI
SVKAAEYTLK AKGRILKFDG WTRVQRPMGK NEDTILPAVQ LGDKLSLESL DPKQHFTKPP
ARYTEAALVK ELEKRGIGRP STYASIISTI QDRGYVKVDQ RRFYAEKMGE IVTDRLDDSF
NDLMNYDFTA RMEQKLDQIA EGEVNWKAVL DNFFADFTGD LEKAELDESE GGMKLNHIVM
TDIECPTCSR PMGIRTASTG VFLGCSGYAL PPKERCKTTI NLGDEEGIIN VLEEDVETAA
LRAKKRCPIC ETAMDAYLID DKRKMHVCGN NPNCEGYLVE YGEFKVKGYD GPVVECDKCG
SDMVLKNGRF GKYMDCTSET CKNTRKILKN GEVAPPKEDP VHFPELPCEN SDAYFVLRDG
ASGLFMAASN FPKSRETRAP LVAELARFEE RLPEKFKYLA TAPQEDPDGR PAVVRFSRKT
KENYVRSEEN GKPSGWTALF VEGKWEVTDK RKKAKA
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