Gene VEA_003855 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_003855 
Symbol 
ID8557590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand+ 
Start bp2486179 
End bp2487303 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content46% 
IMG OID646406952 
ProducttRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 
Protein accessionYP_003286480 
Protein GI262394626 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0607226 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGATA ACAGCCAAAA GAAAGTCATC GTCGGTATGT CCGGCGGCGT TGATTCATCT 
GTTTCTGCGT ATCTTCTCAA GCAACAAGGC TACCAAGTAG AAGGCCTGTT CATGAAGAAC 
TGGGAAGAAG ATGACAACGA AGAATATTGT ACAGCAGCAG AAGATCTTGC TGATGCTCAG 
GCAGTATGTG ACAAGCTAGG CATTCATCTA CACACCATCA ACTTTGCTGC CGAATACTGG 
GATAACGTAT TTGAGTACTT CCTTGCTGAA TACAAAGCGG GTCGTACACC GAACCCTGAC 
ATTCTTTGTA ACAAAGAAAT CAAGTTCAAA GCGTTCCTAG AATTCGCTGA TGAAGTGCTT 
GATGCTGACT ACATTGCAAT GGGTCACTAC GTACGTCGCT CTTTCCCGGA TAACGGTGAG 
AAACCAGCGA TGTTGCGTGG CCTAGATGGC AACAAAGACC AGAGCTACTT TCTATATACA 
CTAAGCCACG AACAAATTGG CCGTAGCCTC TTCCCTGTTG GTGATTTAGA GAAACCTGAA 
GTACGCCGTA TTGCGGAAGA GCAAGGTTTA GTAACAGCGA AGAAGAAAGA CTCGACAGGT 
ATTTGTTTCA TCGGTGAGCG TAAATTTACC GACTTTCTAG GTCGTTACCT TCCTGCTCAG 
CCTGGTAATA TCGAAACGCC AGAAGGCGAA GTGATCGGTC AACACCAAGG TTTGATGTAC 
CACACACTAG GTCAGCGTAA AGGTCTACAC ATCGGTGGCC GTAAAGGCGG CGGTGGTAAC 
GAAGAGCCGT GGTTTGTTGG TGAAAAAGAC CTAGAGCGTA ACGTGCTAAT CGCAGTCCAA 
GGTAAAGACC ACCCGATGCT AAAATCAGAA GGTCTACTTG CGTCACAACT TCACTGGGTA 
GATCGTGAGC CAATTCGCGA TGTTATGAAG TGCACAGTGA AAACTCGTTA CCGTCAGGAA 
GATATTCCTT GTACAATCAT CCCGATCGAT GATGAAAACA TTAAAGTGAT CTTTGATGAA 
CCACAAATTG CAGTGACGCC TGGTCAATCA GCAGTGTTTT ATAAAGATGA CGTATGTCTA 
GGTGGCGGCA TCATCGAGCA ACGCATTAAA TATTCTCAAG CTTAG
 
Protein sequence
MSDNSQKKVI VGMSGGVDSS VSAYLLKQQG YQVEGLFMKN WEEDDNEEYC TAAEDLADAQ 
AVCDKLGIHL HTINFAAEYW DNVFEYFLAE YKAGRTPNPD ILCNKEIKFK AFLEFADEVL 
DADYIAMGHY VRRSFPDNGE KPAMLRGLDG NKDQSYFLYT LSHEQIGRSL FPVGDLEKPE 
VRRIAEEQGL VTAKKKDSTG ICFIGERKFT DFLGRYLPAQ PGNIETPEGE VIGQHQGLMY 
HTLGQRKGLH IGGRKGGGGN EEPWFVGEKD LERNVLIAVQ GKDHPMLKSE GLLASQLHWV 
DREPIRDVMK CTVKTRYRQE DIPCTIIPID DENIKVIFDE PQIAVTPGQS AVFYKDDVCL 
GGGIIEQRIK YSQA