| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003805 |
|---|
| Symbol | |
|---|
| ID | 8557540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 2434253 |
|---|
| End bp | 2435461 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646406902 |
|---|
| Product | cystathionine beta-lyase |
|---|
| Protein accession | YP_003286430 |
|---|
| Protein GI | 262394576 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.227747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAGG GCAAAAAAAC CAAGCTCATT ACCGCTGGCC GCGATAAAAA GTGGACAAAC
GGTGTTGTAA ACCCACCCGT TCAACGCGCT TCAACCGTGG TATTCAACAC GGTTGCAGAG
AAGAACCAAG CCACCATGAA CCGTACCAAT AAAACATTAT TTTATGGTCG CCGTGGCACT
AACACGCACT TCGCTTTTCA AGATGCAATG GTTGAGATTG AAGGTGGAGC AGGTTGTGCT
CTCTACCCTT GTGGGACGGC AGCAATTTCA AATGCGATTC TCTCTTTCGT CGAAACTGGC
GATCACATTC TGATGGTGGA CACTTGTTAC GAACCAACTC GTGATTTTTG TAATATCATC
ATGAAGAAAA TGGGCATCGA AACTACCTAT TATGATCCGA TGATTGGAGA AGGTATTCGT
GATTTGATTC AACCAAATAC CAAAGTCCTT TTCCTAGAAT CTCCGGGGTC AGTCACAATG
GAGGTGCAGG ACGTACCAAC ATTGGCGCGC ATTGCTCATA AGCACGATAT TATTGTGATG
CTTGATAACA CATGGGGAGC TGGCGTGAAC TTCTCACCAT TTGAACATGG TGTCGATATT
TCCATTCAAG CCGCCACCAA ATACATAGTT GGTCACTCTG ATGTAATGTT AGGTACAGCC
GTAGCTTCCG AAAAATACTG GCCCCAACTG CGTGAACAAA GCTACTTGAT GGGTCAGTGC
GTTTCTCCTG ACGACGCATA CCTAGGCCTT CGTGGTATTC GCACGCTGGA TGTTCGCCTA
AGACAACACG CAGAAAGTAG CTTGAAAGTC GCCAAGTGGC TGACTTCTCG TCCGGAAGTT
GATCATGTCC GCCACCCAGC ATTGGAATCG TGCCCTGGCC ATGAGTTTTT CAAACGTGAC
TTCACTGGTG GAAACGGCTT GTTTTCATTT GTTCTCAAAA CGTCTTATCC AAAAGCGACG
ACGGCTCTGC TTGACGGTAT GAAACACTTC AGTATGGGTT ATTCTTGGGG CGGGTATGAA
AGCCTCATTC TAGCTAACGA ACCAAAGAGC TTTAACAACT TGAGAACCGT AGCGCACCCA
TACTTTGAGG GCACTTTAGT TCGAATTCAT ATTGGCTTAG AAGACGTGGA TGACTTGATC
GCCGATCTAG AGGCTGGTTT TGCACGCTAT AACGCGTTAA TTTTAGAAAA AGAAGTCTCT
CTAAAATAG
|
|---|
| Protein sequence | MSEGKKTKLI TAGRDKKWTN GVVNPPVQRA STVVFNTVAE KNQATMNRTN KTLFYGRRGT
NTHFAFQDAM VEIEGGAGCA LYPCGTAAIS NAILSFVETG DHILMVDTCY EPTRDFCNII
MKKMGIETTY YDPMIGEGIR DLIQPNTKVL FLESPGSVTM EVQDVPTLAR IAHKHDIIVM
LDNTWGAGVN FSPFEHGVDI SIQAATKYIV GHSDVMLGTA VASEKYWPQL REQSYLMGQC
VSPDDAYLGL RGIRTLDVRL RQHAESSLKV AKWLTSRPEV DHVRHPALES CPGHEFFKRD
FTGGNGLFSF VLKTSYPKAT TALLDGMKHF SMGYSWGGYE SLILANEPKS FNNLRTVAHP
YFEGTLVRIH IGLEDVDDLI ADLEAGFARY NALILEKEVS LK
|
|---|
| |