| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003682 |
|---|
| Symbol | |
|---|
| ID | 8557417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2290488 |
|---|
| End bp | 2291357 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646406779 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_003286307 |
|---|
| Protein GI | 262394453 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCGA AACAACTTAA ACATTTTCTG GCGGTCGCTG AACATGGAAA CATTACCCAT
GCGGCGAAAG CCCTGCATAT TGCCCAGCCC GCTTTAAGCA TTTCTATCAA AAAGTTTGAG
CAGTCTTTGG GCGTGACCCT ATTTCGCCGT GATGATAAAA AAATCAGCTT AACGAAAGAG
GGCGAAACGC TACTTGTACA TGCCAAGCGG GTGATTCAAC AGTTGCACGA CGCGCAGCTC
GCGATTAATG AGTTGAAAGG CTTAGCGAAA GGAGAAGTAC GACTCGGAAC GCCATCAATG
ATGGGCAGTT ATTTCTTTCC ACGAATTGTG ATGGCGTTTA AAAGCCAGTT CCCGGAGTTA
AAATTGACCT TGGTCGAAGC TGGGACTCAA TCGATTCGTC GTATGCTGCT CAATGGTCAA
CTCGATATCG GTGTGATCAG TTGTGATAAC GTGCCTGATG ACCTAGAAAC TGACCATTTA
TTTACTAGCC AAATGGTCGC AGTTGTTTCA CCTGAGCATG AGTTAGCCCA GCGAGACACT
CTTACTTTTG ATGAGTTCTT TGAACACGAT TTGGTTATGT TTCAGCATGG CTATTTTCAC
CGCGAATTTT TGGATCAGGT GAGTGAGGAG CATGGGTTTA CCATGAAGTC ATCATTCGAG
ACCAACTTAC TGCCTTTGAT TTTGAGTATT GTGAAACAAG AGTTTGCGAT TACCGCGTTA
CTGGAATTGG TGACTCAACA TGAGTCGGGC GTTGTTGGCC TACCGTTTGA ACCACCCGTT
ACGCTGGATC TGGCACTTGC TTGGCGCAAG CAGGGGTATT TATCAATAGC AGATCGAACG
TTTATCGACT TTATCAAGCG CTACGTTTAA
|
|---|
| Protein sequence | MESKQLKHFL AVAEHGNITH AAKALHIAQP ALSISIKKFE QSLGVTLFRR DDKKISLTKE
GETLLVHAKR VIQQLHDAQL AINELKGLAK GEVRLGTPSM MGSYFFPRIV MAFKSQFPEL
KLTLVEAGTQ SIRRMLLNGQ LDIGVISCDN VPDDLETDHL FTSQMVAVVS PEHELAQRDT
LTFDEFFEHD LVMFQHGYFH REFLDQVSEE HGFTMKSSFE TNLLPLILSI VKQEFAITAL
LELVTQHESG VVGLPFEPPV TLDLALAWRK QGYLSIADRT FIDFIKRYV
|
|---|
| |