| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003660 |
|---|
| Symbol | |
|---|
| ID | 8557395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 2265677 |
|---|
| End bp | 2266660 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646406757 |
|---|
| Product | oligopeptide transport ATP-binding protein OppD |
|---|
| Protein accession | YP_003286285 |
|---|
| Protein GI | 262394431 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTATCTA TTGAAAACAT GAACGTGCGC TTCGATACGC CAGATGGGCA AGTGCAAGCG
GTCAGTAATC TCTCCTACTC GATTAAAGCA GGCGAAACTC TTGGGATTGT TGGAGAGTCA
GGCTCGGGAA AAAGCCAGTC TGTCTTCGCG TTAATGGGGT TAACCGCGGA TAACGGCGCC
GTGTCTGGCA GCGCGATGTT CCACGGTGAT GATTTACTCG CGATGTCTAA AAAGCAGCTC
AACCGCATCC TTGCAGAGAA AATCGGAATG ATCTTTCAAG ATCCGATGAC GTCACTCAAT
CCATTCATGA AAATTGGCAA ACAGCTTTGT GAAGTTCTCA TGATTCATAA AGGAATGAGC
CGAAAACAAG CAAAAGTTGA ATCGATTCAC ATGTTGGATG CGGTGCGTAT TCCCTCTCCC
GAGACTCGGA TGAATCAATA CCCTCACGAA TTATCTGGCG GAATGCGTCA GCGAATCATG
ATAGCGATGG CATTGTTGTG TAAGCCCGAG TTGTTAATTG CAGACGAACC AACTACCGCG
CTGGATGTGA CCGTTCAGGC TCAAATTTTG ACGCTATTAC GAGACTTACA ACAAGAGTTC
AACACCGCAA TTTTACTGAT CACTCACGAT ATGGGCGTCG TCGCCGAGAT GTGTGATCGC
GTATTGGTCA TGTATGGTGG TCAAAAAATG GAGCAATCCG ATACCGAGAC ATTGTTCGCT
CAACCTGCGC ACCCCTACAC TCAAGGCCTG CTAAAGGCTA TTCCTTCTAT CACTGAAGAT
ATGCCACGTT TACCAACCAT CCCAGGTAAC CCACCAAGTG CGTTGATTAA CCATCAAGGG
TGTCCGTTTA GAGAGCGGTG CGAGCATCGA GAGACGCGTT GCCAATACGA AACCCCACGG
TTTTCCCCAT TGAACACGAG CCAGTCCATT GCCTGTCACG TTAAAGCACC CAGCGTTATC
ACTCCTATTC AAATAAAAGC TTAA
|
|---|
| Protein sequence | MLSIENMNVR FDTPDGQVQA VSNLSYSIKA GETLGIVGES GSGKSQSVFA LMGLTADNGA
VSGSAMFHGD DLLAMSKKQL NRILAEKIGM IFQDPMTSLN PFMKIGKQLC EVLMIHKGMS
RKQAKVESIH MLDAVRIPSP ETRMNQYPHE LSGGMRQRIM IAMALLCKPE LLIADEPTTA
LDVTVQAQIL TLLRDLQQEF NTAILLITHD MGVVAEMCDR VLVMYGGQKM EQSDTETLFA
QPAHPYTQGL LKAIPSITED MPRLPTIPGN PPSALINHQG CPFRERCEHR ETRCQYETPR
FSPLNTSQSI ACHVKAPSVI TPIQIKA
|
|---|
| |