Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_003606 |
Symbol | |
ID | 8557339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 2207420 |
End bp | 2209081 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646406701 |
Product | High-affinity choline uptake protein BetT |
Protein accession | YP_003286231 |
Protein GI | 262394377 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCACCG ATAATAACGG TGGCATTCAA CGCCCCGATG GAAAGGTAAA CGCGATAGAC ACTGACTATC AAATTGGTCA GGATAACGTC GCGTTAAAAG TAGGCCCGTT TGGCCTTGAT ATTCATAACC GTGTTTTTGC AATTTCTGGT TTAGCAATCA TCCTATTTGT TGTAGTAACA CTATTATTTC GAGAACAGGT AGAGCCGTTT TTCGCAGATC TAAGAGCGGG TTTGTTACAC CATTTGGATT GGTTCTTTCT CGCATCTGGT AATATTTTTG TCATTGTCTG TGTTGGGTTG ATTTTTACAC CGCTAGGTCG CGTACGAATC GGCGGTACAG AAGCGACGCC AGATTATTCC TATGCGGGTT GGTTGGCAAT GCTCTTTGCA GCAGGTATGG GTATCGGTCT GGTGTTCTTT GGTGTATCAG AACCTATGTC TCATTTTAGT TCTGCTATTG GTGGCGTGAA CGTTGAGAAT GGTGTTCGTA CTGACTGGGC CCCTCTAGGT GGTGCAGAAG GCGATGCAAG TGCTGCATCT GCACTAGGCA TGGCGGCGAC GATTTACCAC TGGGCGCTTC ATCCGTGGTC AATCTATGCG CTATTGGCCC TTGGTTTGGC GATTTTCTCG TTTAACAAAG GCTTACCACT TACCATGCGA TCCATTTTTT ACCCACTGTT TGGTGAGCGT GTATGGGGTT GGACTGGTCA CATTATCGAC ATTCTTGCTG TTGTAGCGAC AGTTTTTGGT CTGGCAACGT CCCTAGGTTA CGGTGCGTCT CAAGCCGCAA CGGGTTTGAA CTTCCTATTT GATGTCCCAA TGACGAATAC TACGCAGGTA CTATTGATTA TTGGCATCAC CGCACTCGCT TTAATCTCAG TTGTTGCGGG ACTAGACAAA GGCGTGAAAA TCTTATCTGA GATCAACATG GGTCTCGCTG CGCTTTTACT GCTTTTCGTT ATTGTTGTCG GCCCGACGAT CGCGATTTTA ACGGGCTTCT TCGAAAATAT AGTGTCATAT GTGGCTAATA TTCCTGCCCT ATCAATGCCA TTTGGACGAG AAGACGTAAA CTATTCTCAA GGTTGGACAG CATTCTACTG GGCTTGGTGG ATTTCTTGGT CACCATTTGT CGGTATGTTC ATTGCGCGTG TATCTCGTGG TCGTTCAGTT CGTGAGTTCA TTATTTGCGT TATCCTTATC CCTTCTTCTG TTTGTGTGTT ATGGATGACC GCTTTTGGTG GTAACGCTAT AAGCCAATAC GTGAGCGATG GTTATGAAGC CGTGTTCAAC GCGGAATTAC CGTTAAAACT ATTTGCCATG TTAGATGTGA TGCCGCTAGC TGAAATTACA TCTTTCGTCG GTATTATTTT GGTGGTGGTA TTCTTCATTA CCTCTTCAGA CTCTGGTTCA CTGGTTATTG ATACTATTGC TGCGGGCGGT AAGGTCGATG CGCCAACGCC TCAACGCGTG TTCTGGTGTA CGTTTGAAGG CTTAGTTGCG ATTGCATTGA TGCTTGGTGG TGGCCTAGCG GCAGCTCAAG CAATGGCCGT GACCACAGGC CTACCATTTA CGATTGTTCT GCTTGTTGCA ACGGTTTCTC TAGTAAAAGG CTTGATGGAT GAACCTCGTC CAAAAGCGGC TTCTAAGAAG AAATCGAAAT AA
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Protein sequence | MSTDNNGGIQ RPDGKVNAID TDYQIGQDNV ALKVGPFGLD IHNRVFAISG LAIILFVVVT LLFREQVEPF FADLRAGLLH HLDWFFLASG NIFVIVCVGL IFTPLGRVRI GGTEATPDYS YAGWLAMLFA AGMGIGLVFF GVSEPMSHFS SAIGGVNVEN GVRTDWAPLG GAEGDASAAS ALGMAATIYH WALHPWSIYA LLALGLAIFS FNKGLPLTMR SIFYPLFGER VWGWTGHIID ILAVVATVFG LATSLGYGAS QAATGLNFLF DVPMTNTTQV LLIIGITALA LISVVAGLDK GVKILSEINM GLAALLLLFV IVVGPTIAIL TGFFENIVSY VANIPALSMP FGREDVNYSQ GWTAFYWAWW ISWSPFVGMF IARVSRGRSV REFIICVILI PSSVCVLWMT AFGGNAISQY VSDGYEAVFN AELPLKLFAM LDVMPLAEIT SFVGIILVVV FFITSSDSGS LVIDTIAAGG KVDAPTPQRV FWCTFEGLVA IALMLGGGLA AAQAMAVTTG LPFTIVLLVA TVSLVKGLMD EPRPKAASKK KSK
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