Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_003600 |
Symbol | |
ID | 8557333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 2198898 |
End bp | 2201024 |
Gene Length | 2127 bp |
Protein Length | 708 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646406695 |
Product | TPR domain protein |
Protein accession | YP_003286225 |
Protein GI | 262394371 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.210834 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAATGA AACATGCAAA CTCAGAATCT GTTCAAGGTG ATTTTGATAA CCGCACAGTG ACGCATGATG GGCAACCCAA CCGTTTTTTT AGACAAGGCG AGGAGTATTG GGTCAATATT CAAGGCCCTG ATGGTGAATG GCATGATTAT AAAATTAGCT ACACATTTGG CTGGGAACCG TTACAGCAAT ATATGGTGGA GTTTGAAGAC GGTCGTGTAC AGCTCATTCC TTTTGCGTGG GATTCAAGGA CGAAATCGGA AGGTGGTCAG CGCTGGTTTC ACCTCTATCC AGAGACAACA ACGACAGATG AGTTTTACTG GACTAACACT GGGCAAAATT GGAATTTCAT GTGTGCAGAC TGTCATTCGA CCAATTTAAA GAAGAACTAT GAAGCAATCA AAAATACCTA CAACACGTCT TGGTCCGAGA TCAATGTTGG TTGTGAAGCG TGTCATGGCC CTGCAAGTGG ACACATCGAG TTGGCGAAAA AATCCGCATC TACAGGAGGC TCTTTCGATA CAGATAGTCA CTATGGTTTT GACCGAAATT TATCTAAAGC GGTAACCGAG TGGGTATTTG AGAAGGGCCA CAGAACGTTA CAACCAAAAG CAATCGCAGA AACAAATCAA GTTCAGACGT GCGCACAATG TCACAGCCGT CGAACGCAGT TGAATGAGAC AGGTGATCAC ATTCAAGGCT CATTTTTCGA TAAATATCGG TTAAGCCTGA TCACTCCAGA ACTCTACTAC CACGATGGCC AAATTTACGA TGAAGACTAT GTTTACGGTT CATTTCTTCA GTCTGAAATG GCTGAAAAAG GCGTAACATG CACCAATTGC CACGATCCTC ATTCGGCAAA ACTAAACATC CCAGAAGAGG CGGTATGTTC ACAATGTCAT ATTGCGTCAG AATATACCCC AGAAAACCAC ACCTTCCATG AAGCGGGAGC CAAAGCGTCA CAATGCACGA CTTGTCACAT GCCAGAAACG ACTTATATGC AAGTCGATCC TCGTAGAGAC CACAGTTGGC ACGTACCTAG ACCTGACTTG AGTAAACACA TCGACACGCC TAATGTATGT GCGTCTTGTC ATGAGGATAA GAGTAACCAG TGGGCGGATG CGCAGATAGC CGAATGGTTT CCTCACTCTC AATACCGCAA TCAACAACAC TTTGCTGTCG CGTTTTATGC CGATGCAATT GGGCACAAAG GGGCGGCGAA TGCTCTGGCT TACTCTGCTC AGGATTCATC ATTAAAAGAC ATCATACGAG CTTCTGCATT AGAGCGAATG GGCGGCAATA CTGACCAAAA TACGACTGTT TCGCTTGCAA GGGCCGTTAA AAATGAGAAT GAAATGATTA GACTCGGCGC AGTCGCGGGC TCGTCTGGTT ATGAGTTTCA TGATCGATGG CGAATTTTAG AACCACTGCT GGATGATCCC GTACTTTCAG TGAGGGCGGA GGCGGCTTCG GTATTAGTGA CCAGCTATGC GCAAATGACG CCGTTACAAA AAGATAGGAT TCAACCACCG CTTGAAGAGT ACATGGACAT TCAAAAGTTT AACGCCGATC GTGGTTTCGG CAGAACCAAT TTGGCAAATG TATACCGCAG CTTAGGCGAA ATCGATAAGG CAATTGCGTT ATACCAAGAA GCGATAAGTA TCGAGCCTTA TTTCGAAAAT AGTTACGTGA ATTTATCGGA CCTGTATAGA CGCCTTGGGA AAGAAAAAGC TGCGCTCTCG GTGTTACAAC AAGGGATGAA AGCTCAGCCT AAATCCAGCT CATTACCTTA CAGTGCCGGT CTTTCTTTGT TACGCCAAGG CAAGGAAGAT GAGGCCAAAG CTCTACTTAA ACATGCCGCA GAACTAGGAA AGACAAACGC TCACTACTGG TATGTTTATG GTCTAGCTTT AGAAAAAAGT GAAGTTCTGG AAGCCAGTAA GGCATTGCAG ACTGCGTTTA AAGTTGGTGG GAACCCTCAA CATTTATATG CTCAATGCGA AGTTCTAGCG AGAAATCATA AAAAAGGTGC TGTCGCTTTT GCTTTCGATA GGTGTCTAAA AGAGCTGAGT AATTATGCTC CTAAGCAGGC TATTGATCAG CTGAAAGCAT CTATTGCGAA TCTGTAG
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Protein sequence | MAMKHANSES VQGDFDNRTV THDGQPNRFF RQGEEYWVNI QGPDGEWHDY KISYTFGWEP LQQYMVEFED GRVQLIPFAW DSRTKSEGGQ RWFHLYPETT TTDEFYWTNT GQNWNFMCAD CHSTNLKKNY EAIKNTYNTS WSEINVGCEA CHGPASGHIE LAKKSASTGG SFDTDSHYGF DRNLSKAVTE WVFEKGHRTL QPKAIAETNQ VQTCAQCHSR RTQLNETGDH IQGSFFDKYR LSLITPELYY HDGQIYDEDY VYGSFLQSEM AEKGVTCTNC HDPHSAKLNI PEEAVCSQCH IASEYTPENH TFHEAGAKAS QCTTCHMPET TYMQVDPRRD HSWHVPRPDL SKHIDTPNVC ASCHEDKSNQ WADAQIAEWF PHSQYRNQQH FAVAFYADAI GHKGAANALA YSAQDSSLKD IIRASALERM GGNTDQNTTV SLARAVKNEN EMIRLGAVAG SSGYEFHDRW RILEPLLDDP VLSVRAEAAS VLVTSYAQMT PLQKDRIQPP LEEYMDIQKF NADRGFGRTN LANVYRSLGE IDKAIALYQE AISIEPYFEN SYVNLSDLYR RLGKEKAALS VLQQGMKAQP KSSSLPYSAG LSLLRQGKED EAKALLKHAA ELGKTNAHYW YVYGLALEKS EVLEASKALQ TAFKVGGNPQ HLYAQCEVLA RNHKKGAVAF AFDRCLKELS NYAPKQAIDQ LKASIANL
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