| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003548 |
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| Symbol | |
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| ID | 8557281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2135782 |
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| End bp | 2139768 |
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| Gene Length | 3987 bp |
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| Protein Length | 1328 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646406643 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_003286173 |
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| Protein GI | 262394319 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.966108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACTTCGT CACAGCCCCC AAAAAAGAAT CCCGCTGAAG AGCAAGCGAC ACCGTCAAAT
GGTGTGCAAA AGGCGACAGC GAAACAAGAT AAAGCACCTC AGGCTCAAGT GAATAGCGCG
GCGTCTCTAC GCAAAGCGTT AAGCCAGTGC ATGATGCGTG ACCGCTTCCG TTTAAGTAAA
CGCATTTCTG GTGCGAGCAA AATTAAGAAA GATGCAGCAC GTAATGCTGT GTTTGATGAA
ATTGCACTCG ACATTGCTAA ATCGATGATG GTTGCGGAAC AACGCAGCAA CTACAAACCA
ACGATTGAAT ACCCAGAAAT TCTGCCCGTC AGCCAAAAGC GTGACGACAT CGCTAAAGCG
ATTGAAGAAA ACCAAGTGGT TATCGTCGCG GGTGAGACCG GTTCTGGTAA AACCACTCAG
CTGCCAAAAA TCTGTGCTGA GCTTGGTCGC GGTAAGTACG GTTTGATTGG CCATACTCAG
CCTCGTCGTC TTGCGGCGCG TTCGGTTGCG AACCGTATTG CCGAAGAGAT GGAAACTAAG
TTGGGTGAGT TTGTTGGTTA CAAGGTTCGA TTCAACGATC AGATCTCTGA AAATACCCAA
ATCAAATTGA TGACGGACGG TATCTTGCTG GCTGAAATTC AGCATGACCG TTTCTTGAAT
CAATACGACA CCATTATTAT CGATGAAGCG CACGAGCGCA GCCTTAACAT CGATTTCATC
TTGGGTTACT TGAAAGAGTT GCTACCACGC CGTCCTGATT TGAAAGTAAT TATCACGTCG
GCAACCATCG ACCCAGAGCG TTTTTCAAAA CACTTCAACA ATGCACCAAT CATTGAAGTA
TCGGGTCGTA CTTACCCAGT AGAAACGCGT TACCGCCCAC TAAGCGGTGA TGACGACAAT
GATCGTGACC AACTTGAAGG CATCTTCGAA GCGGTCGACG AATTGTGCGA TGAAGGTTTA
GGTGACATCC TGATCTTCAT GAACGGTGAG CGTGAAATTC GTGATACCGC AGATGCACTG
TCTAAACGCA ATCTGAAGAG CACCGAAATT GTGCCGCTTT ACGCGCGTTT GTCGGCGGGC
GAGCAGAACA AGATTTTCCA ACCTCATGCT GGTCGCCGAA TTGTACTGGC AACCAACGTG
GCAGAAACCT CGCTAACCGT TCCGGGTATT AAATATGTTA TCGACCCGGG CACGGCTCGT
ATCAGCCGAT ACAGTTACCG CACCAAGGTT CAGCGTCTTC CAATCGAGCC GGTTTCTCAG
GCGAGTGCGA ACCAACGTAA AGGTCGTTGT GGTCGTGTGG AAGAGGGTAT CTGTATCCGT
CTGTACTCAG AGGAAGATTT TGAGTCGCGC CCAGAGTTTA CCGATCCCGA GATCCTGCGT
ACCAACCTAG CATCGGTTAT CTTACAGATG ACCGCACTTG GCTTGGGTGA CATTCAAGCC
TTCCCATTTG TGGAAGCGCC GGACAAACGT AACATCCAAG ATGGTGTTCG TTTGCTGGAA
GAGCTTGGCG CGATTAATTC TGAGGTAAAA GACCCGAAAA AACGCCTGAC TTCCATCGGT
CGCCAATTAG CTCGTTTGCC AATCGACCCA CGCTTGGCGC GTATGGTTTT GGAAGCGCCA
AAATATGGTG CGCTTAAAGA AGTGATGATC ATTGCAGCGG CCTTGTCGAT TCAAGATCCA
CGCGAGCGTC CTTCAGACAA ACAACAATCA TCAGATGATA AGCACCGTCG TTTCTTCCAT
GAAGAGTCGG ACTTCCTGAC GTTTGTGAAT TTGTGGGAAT ACATCCAAAA GCAGCAAAAA
GCGTTGTCTA GCAACCAGTT CCGCAAGCAG TGTAAGCAAG ATTATTTGAA CTACTTGCGC
GTGCGTGAGT GGCAAGACGT GTACTTCCAA ATTCATCAGT CGATGCGTGA GATGGAATTC
AAACTTAACG ATGAGCCTGC TTCTTACCAT GGTGTACACA GTGCGATCTT GGTTGGTTTG
TTGTCGCACA TCGGTATGAA AGACCAAGAA AAGAATGAAT ATCAAGGCGC GCGCAACGCT
CGTTTCCATA TCTTCCCTGC ATCGGGTCTA TTTAAGAAAC AACCTAAGTG GATAATGTCA
GCCGAGTTGG TGGAAACCTC GAAACTTTGG GGCCGTATCA TTGCCAAGAT TCAGCCGGAG
TGGATTGAGC CATTAGCCAA ACACCTTATC AAGCGCAGTT ACAGCGAACC GCATTGGTCG
AAGAAACGCG CGGCGGTGAT GGCGCACGAA AAAGTCATGC TTTACGGCGT GCCAATCGTA
CCGAAACGTT TGGTGAACTA CGGCAGTATC GATCCGACCG TTAGCCGCGA AATCTTTATT
CGTAGTGCAT TGGTTGAAGG TGAGTGGGAA ACCAAACACG CGTTCTTTAA GCAAAACCGT
AAGCTTCTGC AAGAAGTGGA AGAGCTTGAA CACAAATCTC GTCGTCGTGA CATCTTGGTG
GATGATGATG AGCTGTTTGA TTTCTATGAC CAACGTGTTG GTACCGAAGT GGTGTCTGGT
AAACATTTCG ATACGTGGTG GAAAAAAGCA TCGAAAGAAG ATCCTGAACT GCTGAACTTT
GAAAAAGAGA TGCTGTTCAA GGGCGATGCT AGTCATGTCA CCGATTTGGA TTACCCGAAC
TTCTGGCATC AAAATGGTTT GAAGCTCAAG TTGAGTTACC AATTTGAACC GGGCGATGAT
AGTGACGGTG TCACAGTGCA TTTGCCGTTG CCGATTTTAA ACCAAGTTGA ACCAGCGGGC
TTTGACTGGC AGATCCCGGG TTTGCGTCAT GAGCTTATTG TTAGTTTGAT TAAATCGCTG
CCGAAGACGA TTCGTAAGAA CTTTGTGCCT GCGCCAAACT ATGCCGATGC ATTCTTAGCA
CGCGTAACAC CAATGGAAGC ACCGCTGCTA GACTCGCTAG AAAAAGAACT GCGCCGCATG
ACGGGTGTAG AAGTATTGCG TGAAGACTGG AACTTGGAAC AGGTGCCTGA GCACTTGAAA
GTCACGTTCC GAGCGGTTGA TCATCGAAAT CGCAAACTGA AGGAACATAA AGACCTTCAC
GAATTGAAAG AGAGCTTGAA AGACAAAGTT CAAGAAACAC TTTCCAAAGT GGCAGATGAC
GATATTGAAC AGCAAGGTCT GCATACGTGG AGCTTCGGTG AATTGCCGAA AGTGTATCAA
CAAAAACGTG GTGGCTACGA TGTAAAAGCC TATCCAGCAC TTGTTGATAG CAAAGACAGC
GTTGAAATCA AACTCTACGA AACGGAGTAC GAGCAGATAA CGGCAATGCG TGCTGGTCAG
CGTCGTTTGA TTTTGTTGAA TGTGCCGTCT CCAATTAAAT ATCTGCACGC TAACTTACCG
AACAAATCGA AGTTGGGTTT GTATTTTAAC CCTTACGGCA AAGTGCTTGA TCTGATTGAT
GACTGTATCG CCTGTGGTGT CGATAAGCTT ATTGAAGAGC AGGGTGGCTT AGTTTGGGAG
CCAGAGAAGT TCGAAGCGTT GAAAGAACAC GTTCGTGCTG AACTGGGTGA TACCGTCGTA
GAGATCGCGA AACAGGTTGA GACTATTCTG ACAACGGCGT TCAGCATCAA TAAGAAGCTA
AAAGGCAAAA TCGACTTCAC TATGGCGTTT GCTCTGTCGG ATATCAAAGC ACAAATTGAA
GGCTTGATCT TCAAAGGCTT TGCGACGGAA TGTGGCTGGA AACGCTTGCC GGATATTCTT
CGCTACATGC GTGCGATAGA GCGTCGTATG GAGAAGTTGC CAATCGATCC AAACAAAGAT
CGTTTACACA TGCTGAAGAT TGAATCTGTG ACTCAAGACT ATAAAGAGTT GCTGAACAAG
ATCCCGAAAG GTGTGGCCAT TCCTGAAAAC GTAAAGGAAG TGCGTTGGAT GATTGAAGAG
CTTCGCGTGA GTTACTTTGC TCAACAATTA GGCACTCCTT ATCCTGTTTC AGATAAACGA
GTCAAAAACG CGATTGATGC TTGCTAA
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| Protein sequence | MTSSQPPKKN PAEEQATPSN GVQKATAKQD KAPQAQVNSA ASLRKALSQC MMRDRFRLSK
RISGASKIKK DAARNAVFDE IALDIAKSMM VAEQRSNYKP TIEYPEILPV SQKRDDIAKA
IEENQVVIVA GETGSGKTTQ LPKICAELGR GKYGLIGHTQ PRRLAARSVA NRIAEEMETK
LGEFVGYKVR FNDQISENTQ IKLMTDGILL AEIQHDRFLN QYDTIIIDEA HERSLNIDFI
LGYLKELLPR RPDLKVIITS ATIDPERFSK HFNNAPIIEV SGRTYPVETR YRPLSGDDDN
DRDQLEGIFE AVDELCDEGL GDILIFMNGE REIRDTADAL SKRNLKSTEI VPLYARLSAG
EQNKIFQPHA GRRIVLATNV AETSLTVPGI KYVIDPGTAR ISRYSYRTKV QRLPIEPVSQ
ASANQRKGRC GRVEEGICIR LYSEEDFESR PEFTDPEILR TNLASVILQM TALGLGDIQA
FPFVEAPDKR NIQDGVRLLE ELGAINSEVK DPKKRLTSIG RQLARLPIDP RLARMVLEAP
KYGALKEVMI IAAALSIQDP RERPSDKQQS SDDKHRRFFH EESDFLTFVN LWEYIQKQQK
ALSSNQFRKQ CKQDYLNYLR VREWQDVYFQ IHQSMREMEF KLNDEPASYH GVHSAILVGL
LSHIGMKDQE KNEYQGARNA RFHIFPASGL FKKQPKWIMS AELVETSKLW GRIIAKIQPE
WIEPLAKHLI KRSYSEPHWS KKRAAVMAHE KVMLYGVPIV PKRLVNYGSI DPTVSREIFI
RSALVEGEWE TKHAFFKQNR KLLQEVEELE HKSRRRDILV DDDELFDFYD QRVGTEVVSG
KHFDTWWKKA SKEDPELLNF EKEMLFKGDA SHVTDLDYPN FWHQNGLKLK LSYQFEPGDD
SDGVTVHLPL PILNQVEPAG FDWQIPGLRH ELIVSLIKSL PKTIRKNFVP APNYADAFLA
RVTPMEAPLL DSLEKELRRM TGVEVLREDW NLEQVPEHLK VTFRAVDHRN RKLKEHKDLH
ELKESLKDKV QETLSKVADD DIEQQGLHTW SFGELPKVYQ QKRGGYDVKA YPALVDSKDS
VEIKLYETEY EQITAMRAGQ RRLILLNVPS PIKYLHANLP NKSKLGLYFN PYGKVLDLID
DCIACGVDKL IEEQGGLVWE PEKFEALKEH VRAELGDTVV EIAKQVETIL TTAFSINKKL
KGKIDFTMAF ALSDIKAQIE GLIFKGFATE CGWKRLPDIL RYMRAIERRM EKLPIDPNKD
RLHMLKIESV TQDYKELLNK IPKGVAIPEN VKEVRWMIEE LRVSYFAQQL GTPYPVSDKR
VKNAIDAC
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