| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003490 |
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| Symbol | |
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| ID | 8557223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2071194 |
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| End bp | 2075348 |
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| Gene Length | 4155 bp |
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| Protein Length | 1384 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646406585 |
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| Product | Rhs family protein |
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| Protein accession | YP_003286115 |
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| Protein GI | 262394261 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCTC AATTCGTCAT TCCTATCACG AATCGCTTTG GCGAAAGCTA TCACTTCTCA
GGTCAGTTAC TTACTAGCGG CGAACCTAAA ACATTCGTGA CCAAACAAGA GGCAATAGAG
TTTCTTGAGA GCTTTGGTGA GCTTGACCTT CGCTCTGTCG AGGACTTGTT TTATTTGATT
GGTCAATTCA AGCCAAACAT ACCTGACGGT GAGCTTACTT CCCAACACTA TAATTCAACG
TTTGCCAACG CTTTAGTGAA CGGTGACTTG CATGTCGCTC GAATTGTACC TACCGGCGAA
AACTACGCAC TCTCGTCAGC GGTTACGCCT CCACCGACTC AAAATACCGT CAATGCAAAA
CCATCGAAGG GAAAGGGGAA GTCGAATAAA AAGAGTGGCA GAAGTGCCGC ATCCGCCAAG
CCTCAGCAAC AAAGCAGCGA AAAACATGAG AAAGCCGGTG ATCCTGTATC ACTTGTGACG
GGTGAAGAAA TTCTCGAACT CTATGATATC GAGCTACAAC AAGGTACTAC TTGGCAGCGT
ACTTACCGCT CTTCGCAGTC GGATGTAAAT CATGGAATGG GCTTTGGTTG GCGACATGCA
TTTCAGTTTG AATTACGCGA AAAGACGGAC GAGAGAGACA ACGTTATCGC TTGGGAGTTT
GTTGACGATA AGGCAGATAT CACAGAATTT GAGCCAGTAG ATATTGGAGC AACAAGTTAC
CAGATATACG CTGGTGCGAG CTGTTATTTC CTAAATTCAG CAACTCGGAT CGTGACGCTC
GCTAATGGGC ATCAATATCG ATTTGAACAG AAAGATGATC GTTGGCTTGT TAAACAAGTC
AGAAATGGCA CGTTTTCAAC GTTTCAATTG CAGTATTCTC GAAACCATCG ATTGATCGAG
ATCGCATATA ACAAGCGTCC GGTTCTTGAA TGTCAATATG ATAAGCAAGG ACGCCTTGTA
GAACTGCTTA ATGCAAAGTC GCAAAAAGTT CTGACAACTT ATACCTATGA TGAGCACGAT
GATTTGGTCA GTGCAACTAA TCATTTGGGC TTGAAGGAAC AGTATCAATA CCGCGGCCAT
TTAATTGTTA AGCGTGTACG ACCAACTGGC TTTACTCATT ATTTTGAATG GGATGGCGAA
GGTGCTAACG CGAAATGCAT CAGGAACGTT GGGGACGCAG GAATTTATGA CTATCGCTTC
CATTATCAGG GAAATCATTC TTCTTATTCT GACTCGTTAG ATCATCAATG GTCTTTCTTG
CATGACGAGC AGGGTAACTT ACTCGAGAAA ATAAGCCCCA CCGGTAAAAC TTGGCGATGG
CAATATGATG AATTAGGACG AAAAGCACAA GCTATCTATC CTGATCAGTC AACGGTCAAT
TATCAATATA ATCAGCATGG TCAATTAGTT TCTAAGTTTC ATTCCTCTGG CAAAGAAGTT
CAATATGGTT ATGACGGCTT AGGTAAGTTA GTTAAAACGG TTTCACCTGA CGGGGATATC
GAGAAGGCTT ACTACAATAG CCTTGGTCAA AGAGTTTGGG ATACCGATCA GTTCGGCTGT
GTCACGGAAT ATGATTACGA TAAACACGGT CAAGTCGTCA AAAAAGAGTC TGAAGATGGT
AAGAAAAGTC AGTGGTGGTG GGATGAACAA CAAAGACTTA TCGCGAATGA AATAGACGGT
ACATTACTTC GTTACAGCTA CAACGAAGAA GATCTGGTGA ATGGCGTCGC TTATCCCGAT
GGGTGTATTG CTCAACTCGC TTATGATCAA TTTGGCAGGC GTACATCAGT TCGTTATTTT
AACGACGAAG ACAAAGTCGG TTATAGCGAA GAATATTCTT ACGATGAGCA CAGCCGTGTT
GCTCAGATTC GAACGCCAGC AGGCATTACC TCGTATCAGT GGGGAGCACT CGCGCAACAA
GAAGCAGTCA TCTTCCCCGA TGGCAGCCAT ATTTCTTATG AATACGATCA ACAACGTAAC
CTGACTAAAT TAGTTCGGAG TGACGGCTTA GAATTCGAAT TCCTGTATGA CGATGAAGGC
CAGCTGTCAG GAACTGTTGG GTTTGATAAT CTACAAAGCC AATTTGATTA TGACGATATG
GGGCGCATCC ATCGTAAGCA AGTCGCCGAT AGGACTGTGC TGTACCGCTA TGACGCTGCG
GGTTATCTCA AGCACGTCAA AGCAGGAAAT GGTAGCAGTA TTGTAGAGAA CCACTTCAAT
TATACGTTTG GTGGGCGACT TACTTTCGCA TCCAATCGCC ATCAAACATT GCAATACCAA
TACTCTTCAT TCGGGCATTT AACAAAGCGC ATTCAAGGTC AGTTTGAGAT AGCGCAGGAG
TTTAACAGAG TTGGCCAACG CGTATCTCAG GTACTGCCAG ATAATACGGA GCTGAACTTC
TCTTATGATC GATATGGGCG TTTTTCAGCG ATTCGATTTG GAAACCTAGA TTTACCTCAA
ATCAAATTTC ATTACGATGA AATGGGACGA GTTTCCCAAA TTAAAACGGC ACATTTTAAT
GAGCGCATCA TTTATGATGG TGTTGGTCGT TTGGTTGAAC AACATTGGCC AGATAGAGAG
AAAAAGTACG TTTACAACGC ACAAAACCGT ATTTCATCAA TCATTGATAA TACGGCAGGA
GCAACACACT ATCAGTACGA TGCCTTAGGG CAACTGAAAC GAGTCAATGC TTCTGGAGAA
GTGACTAAGT TTGAATACGA TAGTTTTGGC AATCCTACTT TGCCATCTTC GGAGGTATTC
GCTGATCGTA TTGAAGTGCA CGATGATGTC CGGTTCAAAT ATGACGCGCA AGGAAATCAG
ACAAAACGTG AGGGGCAAGG ACACGTTCAG ACTCGCGTAT TTGATGCGTT AAATCAGCTC
ATTGAAGTTC ACACCGACGA TGGTATCAGT CAATATGAAT ATGATGCATT AGGGCGCAGA
ACGAAGAAAA TTACACAACA AGGCGTTACG GAGTTCCTGT GGGAAGGTGA ACGTTTAATT
GGTGAACGCT CTTCAGGTGC TTTCCGTTGG TACCTATATC AACCAGAAAC CTACACGCCA
GTGGCACTGC TAGAAAATGA CGTTATTTAT TGGTACCAGT GCGATCAAGT TGGTAAACCA
GAGCGACTGA TCGATTGCGA GGGGAATGTT GTATGGAGTG CAAGTTACGA TGCTCACGGC
TTTGCTCATG TACATATTGA AAAAGTAGTA AATCCATTGC GTTTTCAAGG GCAGTATTTC
GATCAAGAAA CCAACTTACA TTACAACCTC GCTCGGTATT ACGATCCTAA GCTAGGACGC
TTTATCCAAC AAGATCCGAT ATCAATTGCT GGTGGCATTA ACCATTACCA ATATGCAATC
AACCCTATCC AGTGGATTGA CCCAACAGGT TTCCTATGTG AAGAAGGGCT AAAACGCTTG
CAGCAAATGC TGGCTGAGTA TCAGGCGCAA AACAACGTCC CTCAAGAGGT TTGCGATCAG
ATTTTAGAGG CAGCAAAAGA GTCATCCGTC GGAGAAGATG GCGTCCGTTC ACAGGTCAAA
ATCCGAAGAC CGGATGGCCA AAACCATATT CGCTATGAAT ATGATTTAGA GCGCATTGAT
TCGCAGAAAA ACGAGATTAC CTTCTATCGC CACATAAATT ATTCTGACGG CAGAAAACAT
GAAGTTCATT GCGTTGTCAA GATAGAAGAT TTTGTAAATG CACACGTTAT CGACAGAAAT
GAAGGATCTG GTATTGCGAA CACATCTTTG GATAAAAGTG GAAGTTTGCG AATTTTACAA
GGATTGTTAT TGGAGACGAA GAACTCTGAT GAAACCTTTG ATTTTGGAGC ATATTTAAGG
TCTGTCGTGG GGCCTCCTCC TAAAGATATG CCTGATCCAC ATGCTCACCA CATACTCTTT
AAGAAGGGCT TGGGGGCAGA GCAACAAGCT CTCGTTACTG AGGGCCAAAT TCTTTTGAGG
AAATATGGCA TTGATCCAAT ATTTGGCCCT GAGAATTTAG TGTGGGCTCC AAATCGCATT
GAAGGTCAAC ATGATATTAA GGCGTTACAA CAAGTTATTG ATTTTCTTAA AATGACCGAT
GAAATGTTTG GTACGCGTGA TGAGATGATC AACGCTTTAA AATCACTGGG TAAAACAGCA
GCTGTGAGGA GATAA
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| Protein sequence | MIPQFVIPIT NRFGESYHFS GQLLTSGEPK TFVTKQEAIE FLESFGELDL RSVEDLFYLI
GQFKPNIPDG ELTSQHYNST FANALVNGDL HVARIVPTGE NYALSSAVTP PPTQNTVNAK
PSKGKGKSNK KSGRSAASAK PQQQSSEKHE KAGDPVSLVT GEEILELYDI ELQQGTTWQR
TYRSSQSDVN HGMGFGWRHA FQFELREKTD ERDNVIAWEF VDDKADITEF EPVDIGATSY
QIYAGASCYF LNSATRIVTL ANGHQYRFEQ KDDRWLVKQV RNGTFSTFQL QYSRNHRLIE
IAYNKRPVLE CQYDKQGRLV ELLNAKSQKV LTTYTYDEHD DLVSATNHLG LKEQYQYRGH
LIVKRVRPTG FTHYFEWDGE GANAKCIRNV GDAGIYDYRF HYQGNHSSYS DSLDHQWSFL
HDEQGNLLEK ISPTGKTWRW QYDELGRKAQ AIYPDQSTVN YQYNQHGQLV SKFHSSGKEV
QYGYDGLGKL VKTVSPDGDI EKAYYNSLGQ RVWDTDQFGC VTEYDYDKHG QVVKKESEDG
KKSQWWWDEQ QRLIANEIDG TLLRYSYNEE DLVNGVAYPD GCIAQLAYDQ FGRRTSVRYF
NDEDKVGYSE EYSYDEHSRV AQIRTPAGIT SYQWGALAQQ EAVIFPDGSH ISYEYDQQRN
LTKLVRSDGL EFEFLYDDEG QLSGTVGFDN LQSQFDYDDM GRIHRKQVAD RTVLYRYDAA
GYLKHVKAGN GSSIVENHFN YTFGGRLTFA SNRHQTLQYQ YSSFGHLTKR IQGQFEIAQE
FNRVGQRVSQ VLPDNTELNF SYDRYGRFSA IRFGNLDLPQ IKFHYDEMGR VSQIKTAHFN
ERIIYDGVGR LVEQHWPDRE KKYVYNAQNR ISSIIDNTAG ATHYQYDALG QLKRVNASGE
VTKFEYDSFG NPTLPSSEVF ADRIEVHDDV RFKYDAQGNQ TKREGQGHVQ TRVFDALNQL
IEVHTDDGIS QYEYDALGRR TKKITQQGVT EFLWEGERLI GERSSGAFRW YLYQPETYTP
VALLENDVIY WYQCDQVGKP ERLIDCEGNV VWSASYDAHG FAHVHIEKVV NPLRFQGQYF
DQETNLHYNL ARYYDPKLGR FIQQDPISIA GGINHYQYAI NPIQWIDPTG FLCEEGLKRL
QQMLAEYQAQ NNVPQEVCDQ ILEAAKESSV GEDGVRSQVK IRRPDGQNHI RYEYDLERID
SQKNEITFYR HINYSDGRKH EVHCVVKIED FVNAHVIDRN EGSGIANTSL DKSGSLRILQ
GLLLETKNSD ETFDFGAYLR SVVGPPPKDM PDPHAHHILF KKGLGAEQQA LVTEGQILLR
KYGIDPIFGP ENLVWAPNRI EGQHDIKALQ QVIDFLKMTD EMFGTRDEMI NALKSLGKTA
AVRR
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