| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003485 |
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| Symbol | |
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| ID | 8557218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 2066818 |
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| End bp | 2067855 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646406580 |
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| Product | ABC transporter periplasmic spermidine putrescine-binding protein PotD |
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| Protein accession | YP_003286110 |
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| Protein GI | 262394256 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00749522 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGTA AATTCTACGC AAGCGCTCTA TGTGCAGCGA CGCTCATCGC TACCCCTGCA
ATGGCTGCTG ATCAAGAACT GTATTTCTAC AACTGGTCGG AATACATTCC AAACGAAGTT
CTTGAAGACT TTACAAAAGA AACTGGAATC AAAGTTATTT ACTCTACATA TGAATCTAAC
GAGAGTATGT ACGCAAAACT TAAAACCCAA GGTTCTGGTT ACGACTTGGT AGTACCGTCT
ACCTATTTCG TCTCTAAAAT GCGTAAAGAA AGCATGCTGC AACAGATCGA CAAAGAGAAA
TTGTCTCATT TTGCCGATCT TGATACTAAC TTCCTTAACA AGCCGTTCGA TCCGAACAAC
AACTACTCTA TCCCTTACAT TTGGGGTGCG ACAGGTATTG GTATCAATGC TGACATGCTA
GACAAATCAT CTGTTACGAA GTGGGATGAT TTTTGGGATA GCAAGTGGGA AGGTCAACTA
ATGTTGATGG ATGATTCTCG CGAAGTATTC CACATTGCAT TGACTAAGCT TGGTTACTCA
CCAAACACGA CTAACCCAGA AGAAATCAAA GCCGCTTACG AAGAACTGAA AAAGCTAATG
CCAAACGTAT TAGTATTTAA CTCAGACTTT CCTGCAAACC CTTACCTAGC GGGTGAAGTT
TCACTTGGTA TGCTTTGGAA TGGTTCTGCT TACATGGCTC GTCAAGAAGG CGCGAACATC
GACATCATCT GGCCAGAAAA AGGAACGATC TTCTGGATGG ACAGCCTGGC AATTCCAGCT
GGTGCGAAGA ACGTTGATGC GGCTCATAAG ATGATTGACT TCTTACTTCG CCCAGAAAAC
GCAGCTAAGA TCGCACTAGA GATTGGTTAC CCTACTCCAG TAAAAACGGC ACACGAACTG
CTACCGAAAG AATTTGCTAA CGATCCAAGC ATTTTCCCAC CACAAGAAGT GATGGACAGC
GGTACTTGGC AAGATGAAGT TGGCGAAGCG AGCGTAATGT ACGATGAGTA CTTCCAAAAG
CTAAAAGTGA ACAACTAA
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| Protein sequence | MKSKFYASAL CAATLIATPA MAADQELYFY NWSEYIPNEV LEDFTKETGI KVIYSTYESN
ESMYAKLKTQ GSGYDLVVPS TYFVSKMRKE SMLQQIDKEK LSHFADLDTN FLNKPFDPNN
NYSIPYIWGA TGIGINADML DKSSVTKWDD FWDSKWEGQL MLMDDSREVF HIALTKLGYS
PNTTNPEEIK AAYEELKKLM PNVLVFNSDF PANPYLAGEV SLGMLWNGSA YMARQEGANI
DIIWPEKGTI FWMDSLAIPA GAKNVDAAHK MIDFLLRPEN AAKIALEIGY PTPVKTAHEL
LPKEFANDPS IFPPQEVMDS GTWQDEVGEA SVMYDEYFQK LKVNN
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