| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003484 |
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| Symbol | |
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| ID | 8557217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 2065539 |
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| End bp | 2066570 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646406579 |
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| Product | ABC transporter periplasmic spermidine putrescine-binding protein PotD |
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| Protein accession | YP_003286109 |
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| Protein GI | 262394255 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000109214 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT GGGCTACTCT ATTAGCTGGT AGTGCATGTG CGCTTTCTCT GTTCTCAGGT
TCAGCAGCAG CGGACGATAA AGAATTGGTA TTTATGAACT GGGGGCCTTA CATCAACAGT
AATATCCTAG AGCAATTTAC CAAAGAAACT GGTATCAAAG TGATCTACTC GACTTACGAG
TCGAATGAAA CTTTGTACGC AAAGCTAAAA ACTCATAACC AAGGTTATGA TCTAGTGGTA
CCTTCAACGT ACTTTGTAGC AAAAATGCGC GATGAAGGTA TGCTACAAAA GATCGATAAG
ACTAAGCTGA AAAACTTCGG CAACCTAGAT AAGAACTATC TAGACAAGCC TTACGATCCA
AATAACGACT ACTCTATTCC ACACGTTGTT GCGATTACAG GTCTAGCGGT TAACGCAGAC
ATGTACGATC CAAACGACTT CCAAAGCTGG GCAGACCTAT GGAAGCCTGA GCTTGAAGGT
CAAGTAATGC TGATGGACGA CACTCGTGAA GTCTTCCATA TCGCTCTGCG TAAACTTGGC
TATTCAGGTA ACTCAAAAGA CCCTAAACAA ATCGATGAAG CGTACGCTGA GCTACAAAAG
TTGATGCCAA ACGTTCTAGT TTTCAACTCT GACAACCCAG GCGCACCTTA CATGTCTGGT
GAAGTTGGCG TTGGTATGCT TTGGAACGGC AGCGCTGCAG CTGCTCAAAA TGAAGGCCTA
AACCTTAAAC TCGTATTTCC TAAAGAAGGC GGTATCGGTT GGGTTGATAA CTTCGCTATC
TCTTCCGGTG CGAAGAACGT AGAAGCAGCT CACAAGATGA TCGACTTCCT ACTACGTCCA
GAAATCGCAG AGCAAATCTC ACGTGATACT GGTTACTTAA CAGCGGTAGA GGAATCGAAC
GCTAAGTTTA AAGATGTTGC ACCGCTATTT CCTTCTCAAG AAGATCTTGA TCGAGTGGAA
TGGCAAGATG CGGTTGGTGA TCTAACCGTT AAGTACGAAG ATTACTTCCT AAAGCTGAAA
GCGGGACAGT AA
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| Protein sequence | MKKWATLLAG SACALSLFSG SAAADDKELV FMNWGPYINS NILEQFTKET GIKVIYSTYE
SNETLYAKLK THNQGYDLVV PSTYFVAKMR DEGMLQKIDK TKLKNFGNLD KNYLDKPYDP
NNDYSIPHVV AITGLAVNAD MYDPNDFQSW ADLWKPELEG QVMLMDDTRE VFHIALRKLG
YSGNSKDPKQ IDEAYAELQK LMPNVLVFNS DNPGAPYMSG EVGVGMLWNG SAAAAQNEGL
NLKLVFPKEG GIGWVDNFAI SSGAKNVEAA HKMIDFLLRP EIAEQISRDT GYLTAVEESN
AKFKDVAPLF PSQEDLDRVE WQDAVGDLTV KYEDYFLKLK AGQ
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