Gene VEA_003406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_003406 
Symbol 
ID8557139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand
Start bp1977998 
End bp1979269 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content44% 
IMG OID646406501 
Productagglutination protein 
Protein accessionYP_003286031 
Protein GI262394177 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTTTAC CCGTTTTCGG TCAAACTTTA GAGCAAGCCG TGGCATTGAC GTTAAAAAAC 
AATCCTGACA TTAAGAGCGC ATTTAACGAG TTCACCAGTC GAAAATACGT AAATGAAGCC
TCTTCGGGCG CCTACTTACC TTCTATTGAT TTAGATGCGG GCATTGGTTA CGAGGGATTA
GACCCTTCTG ACGAGGTGGG ACGTGGGGAT ACAGATTACA CTCGAAAGGA AGCTTCGGTA
ACACTAACTC AGCTCATATG GGATGGCAGT GCAACCTTAA ATGATATCGA TCGTACCGCA
GCCGATGCAG AGTCAGTTAG ATTTCAACTT TTGGCCGATG CATCAGATAA AGCGCTTGAA
GTCACCAAAG TGTATTTAGA CGCAGTAAAA GCTTACGAAA TACTCAAGCT TTCTGAAAAT
AACTTGGCGG TTCACAAAGA TATTTACGAA GACATTAAAA AACGAGTCAA CTCAGGTATA
GGCTCTACCG CTGACTTAAC ACAGGTAGAA GCACGTTTGG CAAAAGCACA CGGTAATTTG
GCAGCTGCTC AAAATAATTT GTACGACTCT CACACTATGT TCACTCGTTT AGTGGGTCAA
ACCCCGCAAG GGTTGAGCTT TCCAAGAGCG GATCAGAATT TCATTCCATA CACCATTGAT
GAAGCGGTAG GTTTGGCATT TGAGCTGCAC CCTGTCATTC AGGTCGCGCT CGCAGACGTA
GATTCGGCTA AGTTTCAATA CAAACAATCT AAAGGTGTTA ATTACCCAAC CATTTCCATT
GAAGCTTCAC AAACATGGCG TGACGACGCT GATGGCTTAA AAGGCCGCAG TGATGAGACT
CTTGCCATGC TACGTCTACG CTACAACCTA TTTAATGGCG GCAGTGACGC TGCAAACTCA
GAAAACTTCG CCTATCAGTT AAATAAAGCG AAAGACTTAC GTGAAGGTGC TTATCGCAAT
GTTGAAGAAG GGTTAAGGCT TTCATGGAGC GCACTGGATT TGACCCTACA GCAAAAAGAG
TTCCTGTCAG ATCATGTAGA CTCGGCATCT GAAACCGTTA TTGCGTATGA AAAACAATAT
CGCATTGGTA AGCGAACACT GCTTGATCTA TTGAATACTG AAAACGAACT CTTTGAGGCA
CGTAAAGACT ACTTAGATTC TAAATACGCA GAGCAGTACG CCAAATATCG AGTGATGAAC
GCAACAGGTC AACTGTTGAG TGCATTAAGG GTTGAAATGC CTAAAGAATG GCTAGAAGAA
GTGGAGTATT AA
 
Protein sequence
MSLPVFGQTL EQAVALTLKN NPDIKSAFNE FTSRKYVNEA SSGAYLPSID LDAGIGYEGL 
DPSDEVGRGD TDYTRKEASV TLTQLIWDGS ATLNDIDRTA ADAESVRFQL LADASDKALE
VTKVYLDAVK AYEILKLSEN NLAVHKDIYE DIKKRVNSGI GSTADLTQVE ARLAKAHGNL
AAAQNNLYDS HTMFTRLVGQ TPQGLSFPRA DQNFIPYTID EAVGLAFELH PVIQVALADV
DSAKFQYKQS KGVNYPTISI EASQTWRDDA DGLKGRSDET LAMLRLRYNL FNGGSDAANS
ENFAYQLNKA KDLREGAYRN VEEGLRLSWS ALDLTLQQKE FLSDHVDSAS ETVIAYEKQY
RIGKRTLLDL LNTENELFEA RKDYLDSKYA EQYAKYRVMN ATGQLLSALR VEMPKEWLEE
VEY